Merge pull request #786 from oliviajanejohns/explore-cytoscape-merge

Adding CALM Visualizer to main branch from 'explore-cytoscape'

Author: oliviajanejohns

.vscode/settings.json

@@ -1,10 +1,16 @@
 {
-    "testing.openTesting": "neverOpen",
-    "jest.outputConfig": {
-        "revealOn": "run",
-        "revealWithFocus": "none",
-        "clearOnRun": "none"
-    },
-    "java.compile.nullAnalysis.mode": "automatic",
-    "java.configuration.updateBuildConfiguration": "automatic"
-}
+  "testing.openTesting": "neverOpen",
+  "jest.outputConfig": {
+    "revealOn": "run",
+    "revealWithFocus": "none",
+    "clearOnRun": "none"
+  },
+  "editor.formatOnSave": true,
+  "editor.codeActionsOnSave": {
+    "source.fixAll.eslint": "explicit"
+  },
+  "java.compile.nullAnalysis.mode": "automatic",
+  "java.configuration.updateBuildConfiguration": "automatic",
+  "editor.defaultFormatter": "esbenp.prettier-vscode",
+  "editor.formatOnPaste": false
+}

calm-visualizer/.gitignore

@@ -0,0 +1,24 @@
+# Logs
+logs
+*.log
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+pnpm-debug.log*
+lerna-debug.log*
+
+node_modules
+dist
+dist-ssr
+*.local
+
+# Editor directories and files
+.vscode/*
+!.vscode/extensions.json
+.idea
+.DS_Store
+*.suo
+*.ntvs*
+*.njsproj
+*.sln
+*.sw?

calm-visualizer/.prettierrc

@@ -0,0 +1,9 @@
+{
+    "trailingComma": "es5",
+    "tabWidth": 4,
+    "semi": true,
+    "singleQuote": true,
+    "bracketSpacing": true,
+    "endOfLine": "auto",
+    "printWidth": 100
+}

calm-visualizer/README.md

@@ -0,0 +1,50 @@
+# React + TypeScript + Vite
+
+This template provides a minimal setup to get React working in Vite with HMR and some ESLint rules.
+
+Currently, two official plugins are available:
+
+-   [@vitejs/plugin-react](https://github.com/vitejs/vite-plugin-react/blob/main/packages/plugin-react/README.md) uses [Babel](https://babeljs.io/) for Fast Refresh
+-   [@vitejs/plugin-react-swc](https://github.com/vitejs/vite-plugin-react-swc) uses [SWC](https://swc.rs/) for Fast Refresh
+
+## Expanding the ESLint configuration
+
+If you are developing a production application, we recommend updating the configuration to enable type aware lint rules:
+
+-   Configure the top-level `parserOptions` property like this:
+
+```js
+export default tseslint.config({
+    languageOptions: {
+        // other options...
+        parserOptions: {
+            project: ['./tsconfig.node.json', './tsconfig.app.json'],
+            tsconfigRootDir: import.meta.dirname,
+        },
+    },
+});
+```
+
+-   Replace `tseslint.configs.recommended` to `tseslint.configs.recommendedTypeChecked` or `tseslint.configs.strictTypeChecked`
+-   Optionally add `...tseslint.configs.stylisticTypeChecked`
+-   Install [eslint-plugin-react](https://github.com/jsx-eslint/eslint-plugin-react) and update the config:
+
+```js
+// eslint.config.js
+import react from 'eslint-plugin-react';
+
+export default tseslint.config({
+    // Set the react version
+    settings: { react: { version: '18.3' } },
+    plugins: {
+        // Add the react plugin
+        react,
+    },
+    rules: {
+        // other rules...
+        // Enable its recommended rules
+        ...react.configs.recommended.rules,
+        ...react.configs['jsx-runtime'].rules,
+    },
+});
+```

calm-visualizer/eslint.config.js

@@ -0,0 +1,25 @@
+import js from '@eslint/js';
+import globals from 'globals';
+import reactHooks from 'eslint-plugin-react-hooks';
+import reactRefresh from 'eslint-plugin-react-refresh';
+import tseslint from 'typescript-eslint';
+
+export default tseslint.config(
+    { ignores: ['dist'] },
+    {
+        extends: [js.configs.recommended, ...tseslint.configs.recommended],
+        files: ['**/*.{ts,tsx}'],
+        languageOptions: {
+            ecmaVersion: 2020,
+            globals: globals.browser,
+        },
+        plugins: {
+            'react-hooks': reactHooks,
+            'react-refresh': reactRefresh,
+        },
+        rules: {
+            ...reactHooks.configs.recommended.rules,
+            'react-refresh/only-export-components': ['warn', { allowConstantExport: true }],
+        },
+    }
+);