Merge pull request #2532 from gforney/bibs

gforney · web-flow · commit 8fa442d85cf7 · 2026-01-07T22:32:33.000-05:00
add doi or url links to references in smokeview .bib files
diff --git a/Manuals/Bibliography/sv_fire.bib b/Manuals/Bibliography/sv_fire.bib
diff --git a/Manuals/Bibliography/sv_graphics.bib b/Manuals/Bibliography/sv_graphics.bib
diff --git a/Manuals/SMV_Technical_Reference_Guide/SMV_Technical_Reference_Guide.tex b/Manuals/SMV_Technical_Reference_Guide/SMV_Technical_Reference_Guide.tex
@@ -290,7 +290,7 @@ \section{Version History}
 Beginning in the early 1980s and continuing into the 1990s, Howard
 Baum and Ronald Rehm of NIST developed the basic flow solver that
 evolved into the Fire Dynamics Simulator which was publicly
-released in 2000\cite{McGrattan:6}.  Their solution technique,
+released in 2000\cite{FDS_Users_Guide}.  Their solution technique,
 known as Large Eddy Simulation or LES, captures numerically very
 complicated fire plume dynamics.  Unfortunately, the power of the
 methodology could not be appreciated without an effective way to
diff --git a/Manuals/SMV_Technical_Reference_Guide/make_guide.sh b/Manuals/SMV_Technical_Reference_Guide/make_guide.sh
@@ -11,9 +11,10 @@ gitrevision=`git describe --abbrev=7 --long --dirty`
 echo "\\newcommand{\\gitrevision}{$gitrevision}" > ../Bibliography/gitrevision.tex
 
 pdflatex -interaction nonstopmode SMV_Technical_Reference_Guide &> SMV_Technical_Reference_Guide.err
-biber SMV_Technical_Reference_Guide &> SMV_Technical_Reference_Guide.err
+biber                             SMV_Technical_Reference_Guide &> SMV_Technical_Reference_Guide_biber.err
 pdflatex -interaction nonstopmode SMV_Technical_Reference_Guide &> SMV_Technical_Reference_Guide.err
 pdflatex -interaction nonstopmode SMV_Technical_Reference_Guide &> SMV_Technical_Reference_Guide.err
+cat SMV_Technical_Reference_biber.err >> SMV_Technical_Reference_Guide.err
 
 # Scan and report any errors in the LaTeX build process
 if [[ `grep -E "Undefined control sequence|Error:|Fatal error|! LaTeX Error:|Paragraph ended before|Missing \\\$ inserted|Misplaced" -I SMV_Technical_Reference_Guide.err | grep -v "xpdf supports version 1.5"` == "" ]]
@@ -27,13 +28,13 @@ if [[ `grep -E "Undefined control sequence|Error:|Fatal error|! LaTeX Error:|Par
 fi
 
 # Check for LaTeX warnings (undefined references or duplicate labels)
-if [[ `grep -E "undefined|multiply defined|multiply-defined" -I SMV_Technical_Reference_Guide.err` == "" ]]
+if [[ `grep -E "undefined|ERROR|WARNING|multiply defined|multiply-defined" -I SMV_Technical_Reference_Guide.err` == "" ]]
    then
       # Continue along
       :
    else
       echo "LaTeX warnings detected:"
-      grep -E "undefined|multiply defined|multiply-defined" -I SMV_Technical_Reference_Guide.err
+      grep -E "undefined|ERROR|WARNING|multiply defined|multiply-defined" -I SMV_Technical_Reference_Guide.err
       clean_build=0
 fi
 
diff --git a/Manuals/SMV_Technical_Reference_Guide/proc_10032018.tex b/Manuals/SMV_Technical_Reference_Guide/proc_10032018.tex
@@ -110,7 +110,7 @@
 
 Complete methods for visualizing smoke and fire data taking into
 account interactions between light and smoke require the solution
-of the radiation transport equation (RTE)~\cite{Siegel:2001} also
+of the radiation transport equation (RTE)~\cite{Howell:2021} also
 called the volume rendering equation in the visualization
 literature.~\cite{levoy:1988} This equation models how light is
 affected after interacting with smoke, a participating medium. In
@@ -157,7 +157,7 @@
 \ssection{RADIATION TRANSPORT EQUATION}
 
 The model used here to visualize smoke is the radiation transport
-equation (RTE)~\cite{Siegel:2001}.  This equation uses radiance to
+equation (RTE)~\cite{Howell:2021}.  This equation uses radiance to
 represent smoke appearance.  Radiance has units of Watts per
 square meter per unit solid angle~\si{W/(sr.m^2)}.  The solid
 angle accounts for the fact that a light source appears brighter
@@ -187,7 +187,7 @@
 
 The radiation transport equation is used to calculate radiance due
 to one or more light sources within a region possibly containing a
-participating medium such as smoke~\cite{Siegel:2001}. The change
+participating medium such as smoke~\cite{Howell:2021}. The change
 in radiance along a ray with direction $\omega$ at any one instant
 and wavelength may be expressed using
 
@@ -508,7 +508,7 @@
 absorption and scattering. Obscuration or opacity is computed along each
 ray one grid plane at a time, using the Beer-Lambert law as
 follows.  The $\alpha=1-\tau$ values are pre-computed by FDS using
-the Beer-Lambert law~\cite{Siegel:2001}.  The $\alpha$ parameter represents an
+the Beer-Lambert law~\cite{Howell:2021}.  The $\alpha$ parameter represents an
 opacity, 0.0, for completely transparent, and 1.0 for completely
 opaque and is given by
 
diff --git a/Manuals/SMV_Technical_Reference_Guide/smoke_notes.tex b/Manuals/SMV_Technical_Reference_Guide/smoke_notes.tex
@@ -28,7 +28,7 @@ \section{Introduction}
 
 Complete methods for visualizing smoke and fire data taking into
 account interactions between light and smoke require the solution
-of the radiation transport equation (RTE)~\cite{Siegel:2001} also
+of the radiation transport equation (RTE)~\cite{Howell:2021} also
 called the volume rendering equation in visualization
 literature.~\cite{levoy:1988} This equation models how light is
 affected after interacting with smoke, a participating medium. In
@@ -111,7 +111,7 @@ \section{Introduction}
 
 \section{Radiation Transport Equation}
 The model used here to visualize smoke is the radiation transport
-equation (RTE)~\cite{Siegel:2001}.  This equation uses radiance to
+equation (RTE)~\cite{Howell:2021}.  This equation uses radiance to
 represent smoke appearance.  Radiance has units of Watts per
 square meter per unit solid angle~\si{W/(sr.m^2)}.  The solid
 angle accounts for the fact that a light source appears brighter
@@ -145,7 +145,7 @@ \section{Radiation Transport Equation}
 
 The radiation transport equation is used to calculate radiance due
 to one or more light sources within a region possibly containing a
-participating medium such as smoke~\cite{Siegel:2001}. The change
+participating medium such as smoke~\cite{Howell:2021}. The change
 in radiance along a ray with direction $\omega$ at any one instant
 and wavelength may be expressed using
 
@@ -572,7 +572,7 @@ \subsection{Computing Opacity}
 absorption and scattering. The obscuration is computed along each
 ray one grid plane at a time, using the Beer-Lambert law as
 follows.  The $\alpha=1-\tau$ values are pre-computed by FDS using
-the Beer-Lambert law~\cite{Siegel:2001}
+the Beer-Lambert law~\cite{Howell:2021}
 
 \begin{equation}
 \label{eq:alpha}
diff --git a/Manuals/SMV_User_Guide/make_guide.sh b/Manuals/SMV_User_Guide/make_guide.sh
@@ -28,13 +28,13 @@ if [[ `grep -E "Undefined control sequence|Error:|Fatal error|! LaTeX Error:|Par
 fi
 
 # Check for LaTeX warnings (undefined references or duplicate labels)
-if [[ `grep -E "undefined|WARN|multiply defined|multiply-defined" -I SMV_User_Guide.err` == "" ]]
+if [[ `grep -E "undefined|ERROR|WARNING|multiply defined|multiply-defined" -I SMV_User_Guide.err` == "" ]]
    then
       # Continue along
       :
    else
       echo "LaTeX warnings detected:"
-      grep -E "undefined|WARN|multiply defined|multiply-defined" -I SMV_User_Guide.err
+      grep -E "undefined|WARNING|ERROR|multiply defined|multiply-defined" -I SMV_User_Guide.err
       clean_build=0
 fi
 
diff --git a/Manuals/SMV_Verification_Guide/make_guide.sh b/Manuals/SMV_Verification_Guide/make_guide.sh
@@ -28,13 +28,13 @@ if [[ `grep -E "Undefined control sequence|Error:|Fatal error|! LaTeX Error:|Par
 fi
 
 # Check for LaTeX warnings (undefined references or duplicate labels)
-if [[ `grep -E "undefined|WARNING|multiply defined|multiply-defined" -I SMV_Verification_Guide.err` == "" ]]
+if [[ `grep -E "undefined|ERROR|WARNING|multiply defined|multiply-defined" -I SMV_Verification_Guide.err` == "" ]]
    then
       # Continue along
       :
    else
       echo "LaTeX warnings detected:"
-      grep -E "undefined|WARNING|multiply defined|multiply-defined" -I SMV_Verification_Guide.err
+      grep -E "undefined|ERROR|WARNING|multiply defined|multiply-defined" -I SMV_Verification_Guide.err
       clean_build=0
 fi
 
