changelog and schema for 2.4.2

momchil-flex · momchil-flex · commit 8fa5f03c1e2d · 2023-09-28T10:06:40.000-07:00
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -6,12 +6,21 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+### Added
+
+### Changed
+
+### Fixed
+
+## [2.4.2] - 2023-9-28
+
 ### Added
 - Warnings for too many frequencies in monitors; too many modes requested in a ``ModeSpec``; too many number of grid points in a mode monitor or mode source.
 
 ### Changed
 
 ### Fixed
+- Faster sorting of modes in `ModeSolverData.overlap_sort` by avoiding excessive data copying.
 - Ensure same `Grid` is generated in forward and adjoint simulations by setting `GridSpec.wavelength` manually in adjoint.
 - Properly handling of `JaxBox` derivatives both for multi-cell and single cell thickness.
 - Properly handle `JaxSimulation.monitors` with `.freqs` as `np.ndarray` in adjoint plugin.
@@ -957,7 +966,8 @@ which fields are to be projected is now determined automatically based on the me
 - Job and Batch classes for better simulation handling (eventually to fully replace webapi functions).
 - A large number of small improvements and bug fixes.
 
-[Unreleased]: https://github.com/flexcompute/tidy3d/compare/v2.4.1...develop
+[Unreleased]: https://github.com/flexcompute/tidy3d/compare/v2.4.2...develop
+[2.4.2]: https://github.com/flexcompute/tidy3d/compare/v2.4.1...v2.4.2
 [2.4.1]: https://github.com/flexcompute/tidy3d/compare/v2.4.0...v2.4.1
 [2.4.0]: https://github.com/flexcompute/tidy3d/compare/v2.3.3...v2.4.0
 [2.3.3]: https://github.com/flexcompute/tidy3d/compare/v2.3.2...v2.3.3
diff --git a/tidy3d/schema.json b/tidy3d/schema.json
@@ -1,6 +1,6 @@
 {
   "title": "Simulation",
-  "description": "Contains all information about Tidy3d simulation.\n\nParameters\n----------\ncenter : Tuple[float, float, float] = (0.0, 0.0, 0.0)\n    [units = um].  Center of object in x, y, and z.\nsize : Tuple[NonNegativeFloat, NonNegativeFloat, NonNegativeFloat]\n    [units = um].  Size in x, y, and z directions.\nrun_time : PositiveFloat\n    [units = sec].  Total electromagnetic evolution time in seconds. Note: If simulation 'shutoff' is specified, simulation will terminate early when shutoff condition met. \nmedium : Union[Medium, AnisotropicMedium, PECMedium, PoleResidue, Sellmeier, Lorentz, Debye, Drude, FullyAnisotropicMedium, CustomMedium, CustomPoleResidue, CustomSellmeier, CustomLorentz, CustomDebye, CustomDrude, CustomAnisotropicMedium, PerturbationMedium, PerturbationPoleResidue] = Medium(name=None, frequency_range=None, allow_gain=False, nonlinear_spec=None, type='Medium', permittivity=1.0, conductivity=0.0)\n    Background medium of simulation, defaults to vacuum if not specified.\nsymmetry : Tuple[Literal[0, -1, 1], Literal[0, -1, 1], Literal[0, -1, 1]] = (0, 0, 0)\n    Tuple of integers defining reflection symmetry across a plane bisecting the simulation domain normal to the x-, y-, and z-axis at the simulation center of each axis, respectively. Each element can be ``0`` (no symmetry), ``1`` (even, i.e. 'PMC' symmetry) or ``-1`` (odd, i.e. 'PEC' symmetry). Note that the vectorial nature of the fields must be taken into account to correctly determine the symmetry value.\nstructures : Tuple[Structure, ...] = ()\n    Tuple of structures present in simulation. Note: Structures defined later in this list override the simulation material properties in regions of spatial overlap.\nsources : Tuple[Annotated[Union[tidy3d.components.source.UniformCurrentSource, tidy3d.components.source.PointDipole, tidy3d.components.source.GaussianBeam, tidy3d.components.source.AstigmaticGaussianBeam, tidy3d.components.source.ModeSource, tidy3d.components.source.PlaneWave, tidy3d.components.source.CustomFieldSource, tidy3d.components.source.CustomCurrentSource, tidy3d.components.source.TFSF], FieldInfo(default=PydanticUndefined, discriminator='type', extra={})], ...] = ()\n    Tuple of electric current sources injecting fields into the simulation.\nboundary_spec : BoundarySpec = BoundarySpec(x=Boundary(plus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, minus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, type='Boundary'), y=Boundary(plus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, minus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, type='Boundary'), z=Boundary(plus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, minus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, type='Boundary'), type='BoundarySpec')\n    Specification of boundary conditions along each dimension. If ``None``, PML boundary conditions are applied on all sides.\nmonitors : Tuple[Annotated[Union[tidy3d.components.monitor.FieldMonitor, tidy3d.components.monitor.FieldTimeMonitor, tidy3d.components.monitor.PermittivityMonitor, tidy3d.components.monitor.FluxMonitor, tidy3d.components.monitor.FluxTimeMonitor, tidy3d.components.monitor.ModeMonitor, tidy3d.components.monitor.ModeSolverMonitor, tidy3d.components.monitor.FieldProjectionAngleMonitor, tidy3d.components.monitor.FieldProjectionCartesianMonitor, tidy3d.components.monitor.FieldProjectionKSpaceMonitor, tidy3d.components.monitor.DiffractionMonitor], FieldInfo(default=PydanticUndefined, discriminator='type', extra={})], ...] = ()\n    Tuple of monitors in the simulation. Note: monitor names are used to access data after simulation is run.\ngrid_spec : GridSpec = GridSpec(grid_x=AutoGrid(type='AutoGrid',, min_steps_per_wvl=10.0,, max_scale=1.4,, dl_min=0.0,, mesher=GradedMesher(type='GradedMesher')), grid_y=AutoGrid(type='AutoGrid',, min_steps_per_wvl=10.0,, max_scale=1.4,, dl_min=0.0,, mesher=GradedMesher(type='GradedMesher')), grid_z=AutoGrid(type='AutoGrid',, min_steps_per_wvl=10.0,, max_scale=1.4,, dl_min=0.0,, mesher=GradedMesher(type='GradedMesher')), wavelength=None, override_structures=(), type='GridSpec')\n    Specifications for the simulation grid along each of the three directions.\nshutoff : NonNegativeFloat = 1e-05\n    Ratio of the instantaneous integrated E-field intensity to the maximum value at which the simulation will automatically terminate time stepping. Used to prevent extraneous run time of simulations with fully decayed fields. Set to ``0`` to disable this feature.\nsubpixel : bool = True\n    If ``True``, uses subpixel averaging of the permittivity based on structure definition, resulting in much higher accuracy for a given grid size.\nnormalize_index : Optional[NonNegativeInt] = 0\n    Index of the source in the tuple of sources whose spectrum will be used to normalize the frequency-dependent data. If ``None``, the raw field data is returned unnormalized.\ncourant : ConstrainedFloatValue = 0.99\n    Courant stability factor, controls time step to spatial step ratio. Lower values lead to more stable simulations for dispersive materials, but result in longer simulation times. This factor is normalized to no larger than 1 when CFL stability condition is met in 3D.\nversion : str = 2.4.1\n    String specifying the front end version number.\n\nExample\n-------\n>>> from tidy3d import Sphere, Cylinder, PolySlab\n>>> from tidy3d import UniformCurrentSource, GaussianPulse\n>>> from tidy3d import FieldMonitor, FluxMonitor\n>>> from tidy3d import GridSpec, AutoGrid\n>>> from tidy3d import BoundarySpec, Boundary\n>>> sim = Simulation(\n...     size=(3.0, 3.0, 3.0),\n...     grid_spec=GridSpec(\n...         grid_x = AutoGrid(min_steps_per_wvl = 20),\n...         grid_y = AutoGrid(min_steps_per_wvl = 20),\n...         grid_z = AutoGrid(min_steps_per_wvl = 20)\n...     ),\n...     run_time=40e-11,\n...     structures=[\n...         Structure(\n...             geometry=Box(size=(1, 1, 1), center=(0, 0, 0)),\n...             medium=Medium(permittivity=2.0),\n...         ),\n...     ],\n...     sources=[\n...         UniformCurrentSource(\n...             size=(0, 0, 0),\n...             center=(0, 0.5, 0),\n...             polarization=\"Hx\",\n...             source_time=GaussianPulse(\n...                 freq0=2e14,\n...                 fwidth=4e13,\n...             ),\n...         )\n...     ],\n...     monitors=[\n...         FluxMonitor(size=(1, 1, 0), center=(0, 0, 0), freqs=[2e14, 2.5e14], name='flux'),\n...     ],\n...     symmetry=(0, 0, 0),\n...     boundary_spec=BoundarySpec(\n...         x = Boundary.pml(num_layers=20),\n...         y = Boundary.pml(num_layers=30),\n...         z = Boundary.periodic(),\n...     ),\n...     shutoff=1e-6,\n...     courant=0.8,\n...     subpixel=False,\n... )",
+  "description": "Contains all information about Tidy3d simulation.\n\nParameters\n----------\ncenter : Tuple[float, float, float] = (0.0, 0.0, 0.0)\n    [units = um].  Center of object in x, y, and z.\nsize : Tuple[NonNegativeFloat, NonNegativeFloat, NonNegativeFloat]\n    [units = um].  Size in x, y, and z directions.\nrun_time : PositiveFloat\n    [units = sec].  Total electromagnetic evolution time in seconds. Note: If simulation 'shutoff' is specified, simulation will terminate early when shutoff condition met. \nmedium : Union[Medium, AnisotropicMedium, PECMedium, PoleResidue, Sellmeier, Lorentz, Debye, Drude, FullyAnisotropicMedium, CustomMedium, CustomPoleResidue, CustomSellmeier, CustomLorentz, CustomDebye, CustomDrude, CustomAnisotropicMedium, PerturbationMedium, PerturbationPoleResidue] = Medium(name=None, frequency_range=None, allow_gain=False, nonlinear_spec=None, type='Medium', permittivity=1.0, conductivity=0.0)\n    Background medium of simulation, defaults to vacuum if not specified.\nsymmetry : Tuple[Literal[0, -1, 1], Literal[0, -1, 1], Literal[0, -1, 1]] = (0, 0, 0)\n    Tuple of integers defining reflection symmetry across a plane bisecting the simulation domain normal to the x-, y-, and z-axis at the simulation center of each axis, respectively. Each element can be ``0`` (no symmetry), ``1`` (even, i.e. 'PMC' symmetry) or ``-1`` (odd, i.e. 'PEC' symmetry). Note that the vectorial nature of the fields must be taken into account to correctly determine the symmetry value.\nstructures : Tuple[Structure, ...] = ()\n    Tuple of structures present in simulation. Note: Structures defined later in this list override the simulation material properties in regions of spatial overlap.\nsources : Tuple[Annotated[Union[tidy3d.components.source.UniformCurrentSource, tidy3d.components.source.PointDipole, tidy3d.components.source.GaussianBeam, tidy3d.components.source.AstigmaticGaussianBeam, tidy3d.components.source.ModeSource, tidy3d.components.source.PlaneWave, tidy3d.components.source.CustomFieldSource, tidy3d.components.source.CustomCurrentSource, tidy3d.components.source.TFSF], FieldInfo(default=PydanticUndefined, discriminator='type', extra={})], ...] = ()\n    Tuple of electric current sources injecting fields into the simulation.\nboundary_spec : BoundarySpec = BoundarySpec(x=Boundary(plus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, minus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, type='Boundary'), y=Boundary(plus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, minus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, type='Boundary'), z=Boundary(plus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, minus=PML(name=None,, type='PML',, num_layers=12,, parameters=PMLParams(sigma_order=3,, sigma_min=0.0,, sigma_max=1.5,, type='PMLParams',, kappa_order=3,, kappa_min=1.0,, kappa_max=3.0,, alpha_order=1,, alpha_min=0.0,, alpha_max=0.0)),, type='Boundary'), type='BoundarySpec')\n    Specification of boundary conditions along each dimension. If ``None``, PML boundary conditions are applied on all sides.\nmonitors : Tuple[Annotated[Union[tidy3d.components.monitor.FieldMonitor, tidy3d.components.monitor.FieldTimeMonitor, tidy3d.components.monitor.PermittivityMonitor, tidy3d.components.monitor.FluxMonitor, tidy3d.components.monitor.FluxTimeMonitor, tidy3d.components.monitor.ModeMonitor, tidy3d.components.monitor.ModeSolverMonitor, tidy3d.components.monitor.FieldProjectionAngleMonitor, tidy3d.components.monitor.FieldProjectionCartesianMonitor, tidy3d.components.monitor.FieldProjectionKSpaceMonitor, tidy3d.components.monitor.DiffractionMonitor], FieldInfo(default=PydanticUndefined, discriminator='type', extra={})], ...] = ()\n    Tuple of monitors in the simulation. Note: monitor names are used to access data after simulation is run.\ngrid_spec : GridSpec = GridSpec(grid_x=AutoGrid(type='AutoGrid',, min_steps_per_wvl=10.0,, max_scale=1.4,, dl_min=0.0,, mesher=GradedMesher(type='GradedMesher')), grid_y=AutoGrid(type='AutoGrid',, min_steps_per_wvl=10.0,, max_scale=1.4,, dl_min=0.0,, mesher=GradedMesher(type='GradedMesher')), grid_z=AutoGrid(type='AutoGrid',, min_steps_per_wvl=10.0,, max_scale=1.4,, dl_min=0.0,, mesher=GradedMesher(type='GradedMesher')), wavelength=None, override_structures=(), type='GridSpec')\n    Specifications for the simulation grid along each of the three directions.\nshutoff : NonNegativeFloat = 1e-05\n    Ratio of the instantaneous integrated E-field intensity to the maximum value at which the simulation will automatically terminate time stepping. Used to prevent extraneous run time of simulations with fully decayed fields. Set to ``0`` to disable this feature.\nsubpixel : bool = True\n    If ``True``, uses subpixel averaging of the permittivity based on structure definition, resulting in much higher accuracy for a given grid size.\nnormalize_index : Optional[NonNegativeInt] = 0\n    Index of the source in the tuple of sources whose spectrum will be used to normalize the frequency-dependent data. If ``None``, the raw field data is returned unnormalized.\ncourant : ConstrainedFloatValue = 0.99\n    Courant stability factor, controls time step to spatial step ratio. Lower values lead to more stable simulations for dispersive materials, but result in longer simulation times. This factor is normalized to no larger than 1 when CFL stability condition is met in 3D.\nversion : str = 2.4.2\n    String specifying the front end version number.\n\nExample\n-------\n>>> from tidy3d import Sphere, Cylinder, PolySlab\n>>> from tidy3d import UniformCurrentSource, GaussianPulse\n>>> from tidy3d import FieldMonitor, FluxMonitor\n>>> from tidy3d import GridSpec, AutoGrid\n>>> from tidy3d import BoundarySpec, Boundary\n>>> sim = Simulation(\n...     size=(3.0, 3.0, 3.0),\n...     grid_spec=GridSpec(\n...         grid_x = AutoGrid(min_steps_per_wvl = 20),\n...         grid_y = AutoGrid(min_steps_per_wvl = 20),\n...         grid_z = AutoGrid(min_steps_per_wvl = 20)\n...     ),\n...     run_time=40e-11,\n...     structures=[\n...         Structure(\n...             geometry=Box(size=(1, 1, 1), center=(0, 0, 0)),\n...             medium=Medium(permittivity=2.0),\n...         ),\n...     ],\n...     sources=[\n...         UniformCurrentSource(\n...             size=(0, 0, 0),\n...             center=(0, 0.5, 0),\n...             polarization=\"Hx\",\n...             source_time=GaussianPulse(\n...                 freq0=2e14,\n...                 fwidth=4e13,\n...             ),\n...         )\n...     ],\n...     monitors=[\n...         FluxMonitor(size=(1, 1, 0), center=(0, 0, 0), freqs=[2e14, 2.5e14], name='flux'),\n...     ],\n...     symmetry=(0, 0, 0),\n...     boundary_spec=BoundarySpec(\n...         x = Boundary.pml(num_layers=20),\n...         y = Boundary.pml(num_layers=30),\n...         z = Boundary.periodic(),\n...     ),\n...     shutoff=1e-6,\n...     courant=0.8,\n...     subpixel=False,\n... )",
   "type": "object",
   "properties": {
     "type": {
@@ -508,7 +508,7 @@
     "version": {
       "title": "Version",
       "description": "String specifying the front end version number.",
-      "default": "2.4.1",
+      "default": "2.4.2",
       "type": "string"
     }
   },
@@ -4277,7 +4277,7 @@
     },
     "PointDipole": {
       "title": "PointDipole",
-      "description": "Uniform current source with a zero size.\n\nParameters\n----------\ncenter : Tuple[float, float, float] = (0.0, 0.0, 0.0)\n    [units = um].  Center of object in x, y, and z.\nsize : Tuple[Literal[0], Literal[0], Literal[0]] = (0, 0, 0)\n    [units = um].  Size in x, y, and z directions, constrained to ``(0, 0, 0)``.\nsource_time : Union[GaussianPulse, ContinuousWave, CustomSourceTime]\n    Specification of the source time-dependence.\nname : Optional[str] = None\n    Optional name for the source.\ninterpolate : bool = True\n    Handles reverse-interpolation of zero-size dimensions of the source. If ``False``, the source data is snapped to the nearest Yee grid point. If ``True``, equivalent source data is applied on the surrounding Yee grid points to emulate placement at the specified location using linear interpolation.\npolarization : Literal['Ex', 'Ey', 'Ez', 'Hx', 'Hy', 'Hz']\n    Specifies the direction and type of current component.\n\nExample\n-------\n>>> pulse = GaussianPulse(freq0=200e12, fwidth=20e12)\n>>> pt_dipole = PointDipole(center=(1,2,3), source_time=pulse, polarization='Ex')",
+      "description": "Uniform current source with a zero size.\n\nParameters\n----------\ncenter : Tuple[float, float, float] = (0.0, 0.0, 0.0)\n    [units = um].  Center of object in x, y, and z.\nsize : Tuple[typing_extensions.Literal[0], typing_extensions.Literal[0], typing_extensions.Literal[0]] = (0, 0, 0)\n    [units = um].  Size in x, y, and z directions, constrained to ``(0, 0, 0)``.\nsource_time : Union[GaussianPulse, ContinuousWave, CustomSourceTime]\n    Specification of the source time-dependence.\nname : Optional[str] = None\n    Optional name for the source.\ninterpolate : bool = True\n    Handles reverse-interpolation of zero-size dimensions of the source. If ``False``, the source data is snapped to the nearest Yee grid point. If ``True``, equivalent source data is applied on the surrounding Yee grid points to emulate placement at the specified location using linear interpolation.\npolarization : Literal['Ex', 'Ey', 'Ez', 'Hx', 'Hy', 'Hz']\n    Specifies the direction and type of current component.\n\nExample\n-------\n>>> pulse = GaussianPulse(freq0=200e12, fwidth=20e12)\n>>> pt_dipole = PointDipole(center=(1,2,3), source_time=pulse, polarization='Ex')",
       "type": "object",
       "properties": {
         "type": {
diff --git a/tidy3d/version.py b/tidy3d/version.py
@@ -1,3 +1,3 @@
 """Defines the front end version of tidy3d"""
 
-__version__ = "2.4.1"
+__version__ = "2.4.2"

Original file line number	Diff line number	Diff line change
`@@ -1,3 +1,3 @@`
`1`	`1`	`"""Defines the front end version of tidy3d"""`
`2`	`2`
`3`		`-__version__ = "2.4.1"`
	`3`	`+__version__ = "2.4.2"`