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‎.gitignore‎

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TODO
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# Byte-compiled / optimized / DLL files
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__pycache__/
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*.py[cod]
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.installed.cfg
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*.egg
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# Documentation
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doc/
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# IPython Notebook
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.ipynb_checkpoints
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‎README.md‎

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# pySELFI #
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[![arXiv](https://img.shields.io/badge/astro--ph.CO-arxiv%3A1902.10149-B31B1B.svg?style=flat)](https://arxiv.org/abs/1902.10149)
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[![GitHub version](https://img.shields.io/github/tag/florent-leclercq/pyselfi.svg?maxAge=3600&label=version)](https://github.com/florent-leclercq/pyselfi)
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[![GitHub commits](https://img.shields.io/github/commits-since/florent-leclercq/pyselfi/v1.0.svg)](https://github.com/florent-leclercq/pyselfi/commits)
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[![GitHub version](https://img.shields.io/github/tag/florent-leclercq/pyselfi.svg?label=version)](https://github.com/florent-leclercq/pyselfi)
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[![GitHub commits](https://img.shields.io/github/commits-since/florent-leclercq/pyselfi/v1.1.svg)](https://github.com/florent-leclercq/pyselfi/commits)
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[![DOI](https://zenodo.org/badge/197575311.svg)](https://zenodo.org/badge/latestdoi/197575311)
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[![GPLv3 license](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://github.com/florent-leclercq/pyselfi/blob/master/LICENSE)
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[![PyPI version](https://badge.fury.io/py/pyselfi.svg)](https://badge.fury.io/py/pyselfi)
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## Reference ##
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To acknowledge the use of pySELFI in research papers, please cite its Zenodo doi (see the badge above), as well as the paper <a href="https://arxiv.org/abs/1902.10149" target="blank">Leclercq <i>et al.</i> 2019</a>:
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To acknowledge the use of pySELFI in research papers, please cite its [doi:10.5281/zenodo.3341588](https://doi.org/10.5281/zenodo.3341588) (or for the latest version, see the badge above), as well as the paper <a href="https://arxiv.org/abs/1902.10149" target="blank">Leclercq <i>et al.</i> (2019)</a>:
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*Primordial power spectrum and cosmology from black-box galaxy surveys*<br/>
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F. Leclercq, W. Enzi, J. Jasche, A. Heavens<br/>
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primaryClass = {astro-ph.CO},
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adsurl = {https://ui.adsabs.harvard.edu/abs/2019arXiv190210149L},
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adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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}
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## License ##
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This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. By downloading and using pyselfi, you agree to the [LICENSE](LICENSE), distributed with the source code in a text file of the same name.
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This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. By downloading and using pySELFI, you agree to the [LICENSE](LICENSE), distributed with the source code in a text file of the same name.

‎doc/.gitignore‎

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build/

‎doc/Makefile‎

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# Minimal makefile for Sphinx documentation
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#
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# You can set these variables from the command line.
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SPHINXOPTS =
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SPHINXBUILD = sphinx-build
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SOURCEDIR = source
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BUILDDIR = build
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# Put it first so that "make" without argument is like "make help".
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help:
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@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
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.PHONY: help Makefile
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# Catch-all target: route all unknown targets to Sphinx using the new
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# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS).
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%: Makefile
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@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

‎doc/make.bat‎

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@ECHO OFF
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pushd %~dp0
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REM Command file for Sphinx documentation
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if "%SPHINXBUILD%" == "" (
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set SPHINXBUILD=sphinx-build
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)
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set SOURCEDIR=source
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set BUILDDIR=build
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if "%1" == "" goto help
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%SPHINXBUILD% >NUL 2>NUL
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if errorlevel 9009 (
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echo.
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echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
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echo.installed, then set the SPHINXBUILD environment variable to point
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echo.to the full path of the 'sphinx-build' executable. Alternatively you
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echo.may add the Sphinx directory to PATH.
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echo.
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echo.If you don't have Sphinx installed, grab it from
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echo.http://sphinx-doc.org/
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exit /b 1
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)
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%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%
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goto end
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:help
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%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%
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:end
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popd

‎doc/source/_static/custom.css‎

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.wy-side-nav-search, .wy-nav-top {
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background: #292b30 url('http://florent-leclercq.eu/css/images/bg1_1.jpg');
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}
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.wy-nav-content
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{
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background: #292b30 url('http://florent-leclercq.eu/css/images/bg1.jpg');
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color: #737373;
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font-size: 11pt;
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line-height: 1.75em;
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}
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a, a:visited
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{
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color: #009CBC;
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text-decoration: none;
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}
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a:hover
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{
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color: #00ACD7;
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text-decoration: underline;
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}
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h1,h2,h3,h4,h5,h6
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{
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color: #707070;
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text-shadow: -1px -1px 1px rgba(0,0,0,0.2);
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}
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.wy-side-nav-search>a, .wy-side-nav-search .wy-dropdown>a
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{
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color: #fcfcfc;
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}
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.wy-menu-vertical header, .wy-menu-vertical p.caption
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{
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color: #9b9b9b;
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}

‎doc/source/api/blackboxes/grf.rst‎

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pyselfi_examples.grf.model.blackbox_GRF module
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=================================================
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.. automodule:: pyselfi_examples.grf.model.blackbox_GRF
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:members:
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:undoc-members:
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:show-inheritance:

‎doc/source/api/blackboxes/simbelmyne.rst‎

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pyselfi_examples.simbelmyne.model.blackbox_SBMY module
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=========================================================
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.. automodule:: pyselfi_examples.simbelmyne.model.blackbox_SBMY
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:members:
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:undoc-members:
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:show-inheritance:

‎doc/source/api/blackboxes_api.rst‎

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Example blackboxes API
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======================
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Gaussian random field
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---------------------
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Modules are located in ``pyselfi_examples/grf/model/``.
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.. currentmodule:: pyselfi_examples.grf.model
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.. autosummary::
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blackbox_GRF
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.. toctree::
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:hidden:
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:maxdepth: 2
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blackboxes/grf
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Galaxy survey
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-------------
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Modules are located in ``pyselfi_examples/simbelmyne/model/``.
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.. currentmodule:: pyselfi_examples.simbelmyne.model
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.. autosummary::
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blackbox_SBMY
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.. toctree::
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:hidden:
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:maxdepth: 2
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blackboxes/simbelmyne

‎doc/source/api/inference_api.rst‎

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Modelling & Inference API
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=========================
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Primordial power spectrum
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-------------------------
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Modules are located in ``pyselfi/power_spectrum/``.
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.. currentmodule:: pyselfi
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.. autosummary::
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power_spectrum.prior
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power_spectrum.selfi
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.. toctree::
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:hidden:
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:maxdepth: 2
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power_spectrum/prior
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power_spectrum/selfi

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