ci: update GitHub Actions workflows

Author: paugier

.github/workflows/ci-linux.yml

@@ -9,8 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        # 2024/11/07: 3.13 will have to be added when scikit-image 0.25 is available
-        python-version: ["3.10", "3.11", "3.12"]
+        python-version: ["3.11", "3.11", "3.12", "3.13"]
 
     steps:
     - name: Install apt packages
@@ -20,10 +19,10 @@ jobs:
           libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
           libxcb-xinerama0 libxcb-xfixes0 xdotool
 
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v5
 
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
 

.github/workflows/ci-pixi.yml

@@ -15,10 +15,10 @@ jobs:
       run:
         shell: bash -l {0}
     steps:
-    - uses: actions/checkout@v4
-    - uses: prefix-dev/setup-pixi@v0.8.1
+    - uses: actions/checkout@v5
+    - uses: prefix-dev/setup-pixi@v0.9.2
       with:
-        pixi-version: v0.33.0
+        pixi-version: v0.55.0
         cache: false
     - name: Install
       run: |

.github/workflows/wheels.yml

@@ -21,14 +21,14 @@ jobs:
           - os: macos
             architecture: arm64
     steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
+      - uses: actions/checkout@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: 3.x
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.21.3
+        uses: pypa/cibuildwheel@v3.2.1
         env:
-          CIBW_SKIP: pp* cp36-* cp37-* cp38-* cp39-* *-musllinux*
+          CIBW_SKIP: pp* cp38-* cp39-* cp10-* *-musllinux*
           CIBW_ARCHS: ${{ matrix.architecture }}
       - uses: actions/upload-artifact@v4
         with:
@@ -44,14 +44,14 @@ jobs:
           - os: windows
             architecture: AMD64
     steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
+      - uses: actions/checkout@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: 3.x
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.21.3
+        uses: pypa/cibuildwheel@v3.2.1
         env:
-          CIBW_SKIP: pp* cp36-* cp37-* cp38-* cp39-* *-musllinux*
+          CIBW_SKIP: pp* cp38-* cp39-* cp10-* *-musllinux*
           CIBW_ARCHS: ${{ matrix.architecture }}
           # increase pip debugging output
           # CIBW_BUILD_VERBOSITY: 2
@@ -71,19 +71,19 @@ jobs:
       startsWith(github.ref, 'refs/tags/')
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
       - uses: docker/setup-qemu-action@v2
         with:
           platforms: arm64
 
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: 3.x
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.21.3
+        uses: pypa/cibuildwheel@v3.2.1
         env:
-          CIBW_SKIP: pp* cp36-* cp37-* cp38-* cp39-* *-musllinux*
+          CIBW_SKIP: pp* cp38-* cp39-* cp10-* *-musllinux*
           CIBW_ARCHS: aarch64
       - uses: actions/upload-artifact@v4
         with:
@@ -93,7 +93,7 @@ jobs:
   sdist:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
       - run: echo ${{ github.ref }}
       - run: python -m pip install build twine packaging -U
       - run: python -m build --sdist
@@ -111,7 +111,7 @@ jobs:
     - uses: actions/download-artifact@v4
       with:
         name: sdist
-    - uses: actions/setup-python@v5
+    - uses: actions/setup-python@v6
       with:
         python-version: 3.13
     - run: |