Built site for SingleMoleculeGenomicsIO@0.1.0: 87f5c89

Author: Anka

articles/SE-read-summary-level.png

@@ -3,7 +3,7 @@ pkgdown: 2.2.0.9000
 pkgdown_sha: c07d935583c90125586821e3b39ed52f16593e42
 articles:
   SingleMoleculeGenomicsIO: SingleMoleculeGenomicsIO.html
-last_built: 2026-01-20T07:29Z
+last_built: 2026-01-20T14:34Z
 urls:
   reference: https://fmicompbio.github.io/SingleMoleculeGenomicsIO/reference
   article: https://fmicompbio.github.io/SingleMoleculeGenomicsIO/articles

articles/SingleMoleculeGenomicsIO.html

@@ -248,10 +248,10 @@ se <- readModBam(bamfile = modbamfile, regions = "chr1:6940000-6955000",
            BPPARAM = BiocParallel::SerialParam())
 #> ℹ extracting base modifications from modBAM files
 #> ℹ finding unique genomic positions...
-#> ✔ finding unique genomic positions... [23ms]
+#> ✔ finding unique genomic positions... [25ms]
 #> 
 #> ℹ collapsed 11300 positions to 4772 unique ones
-#> ✔ collapsed 11300 positions to 4772 unique ones [156ms]
+#> ✔ collapsed 11300 positions to 4772 unique ones [318ms]
 #> 
 
 readStats <- calcReadStats(se, BPPARAM = BiocParallel::SerialParam())

articles/SingleMoleculeGenomicsIO.md

@@ -141,7 +141,7 @@ tbl <- countMismatchStatePairs(bamfile = bamfile, bamFormat = "QuasR",
 #> ℹ finding positions with C
 #> ℹ read 184 alignments
 #> ℹ finding positions with C
-#> ✔ finding positions with C [71ms]
+#> ✔ finding positions with C [83ms]
 #> 
 tbl
 #> DataFrame with 200 rows and 5 columns

pkgdown.yml

@@ -71,10 +71,10 @@ se <- readModBam(bamfiles = modbamfile, regions = "chr1:6940000-6955000",
                  BPPARAM = BiocParallel::SerialParam())
 #> ℹ extracting base modifications from modBAM files
 #> ℹ finding unique genomic positions...
-#> ✔ finding unique genomic positions... [23ms]
+#> ✔ finding unique genomic positions... [24ms]
 #> 
 #> ℹ collapsed 11300 positions to 4772 unique ones
-#> ✔ collapsed 11300 positions to 4772 unique ones [161ms]
+#> ✔ collapsed 11300 positions to 4772 unique ones [173ms]
 #> 
 se_exp <- expandSEToBaseSpace(se)
 dim(se)