Expand example for collapseMutantsBySimilarity

Author: csoneson

R/collapseMutantsByAA.R

@@ -68,6 +68,8 @@
 #' dim(sec2)
 #' head(rownames(sec2))
 #' head(SummarizedExperiment::rowData(sec2))
+#' ## collapsed count matrix
+#' SummarizedExperiment::assay(sec2, "counts")
 #'
 collapseMutantsBySimilarity <- function(se, assayName, scoreMethod = "rowSum",
                                         sequenceCol = "sequence",