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modules.json
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138 lines (138 loc) · 6.19 KB
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{
"name": "folkehelseinstituttet/hcvtyper",
"homePage": "https://github.com/folkehelseinstituttet/hcvtyper",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"blast/blastn": {
"branch": "master",
"git_sha": "6330227ba2a71d39f35b0ef60e381f456489c6ee",
"installed_by": ["modules"]
},
"blast/makeblastdb": {
"branch": "master",
"git_sha": "6330227ba2a71d39f35b0ef60e381f456489c6ee",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"],
"patch": "modules/nf-core/bowtie2/build/bowtie2-build.diff"
},
"csvtk/sort": {
"branch": "master",
"git_sha": "d01263b60ce84d777f09819709e94dd17b11ce92",
"installed_by": ["modules"]
},
"cutadapt": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "d9ec4ef289ad39b8a662a7a12be50409b11df84b",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"ivar/consensus": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"kraken2/kraken2": {
"branch": "master",
"git_sha": "0821737e529094ddf3c355b76d19c49ea1469141",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "e10b76ca0c66213581bec2833e30d31f239dec0b",
"installed_by": ["modules"]
},
"picard/collectinsertsizemetrics": {
"branch": "master",
"git_sha": "df124e87c74d8b40285199f8cc20151f5aa57255",
"installed_by": ["modules"],
"patch": "modules/nf-core/picard/collectinsertsizemetrics/picard-collectinsertsizemetrics.diff"
},
"prinseqplusplus": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"samtools/coverage": {
"branch": "master",
"git_sha": "c3ca2a1fe38081e60886fc25735fc24593ee2770",
"installed_by": ["modules"]
},
"samtools/depth": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "e334e12a1e985adc5ffc3fc78a68be1de711de45",
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["modules"]
},
"samtools/sormadup": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["bam_stats_samtools", "modules"]
},
"spades": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["subworkflows"]
}
}
}
}
}
}