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subworkflows/local/contamination_check/main.nf

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@@ -30,6 +30,7 @@ workflow CONTAMINATION_CHECK {
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// Discard samples that produced no long contigs (empty output files)
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// then collect all filtered FASTAs into a single list for concatenation.
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// This step collects all samples so needs to wait until SPADES is completed for all samples.
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ch_all_fas = CONTIG_FILTER_RENAME.out.filtered
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.filter { _meta, fa -> fa.size() > 0 }
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.map { _meta, fa -> fa }

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