Update relative paths

Author: jluethi

demo-october-2022/example_2x2_cardio_fmi/example_user/run_fractal_demo.sh

@@ -68,7 +68,7 @@ fractal task add-subtask $WF_ID "Yokogawa to Zarr" > ${TMPDIR}/args_yoko.json
 
 # Paths of illumination correction images need to be accessible on the server.
 # This works if one runs the client from the same machine as the server. Otherwise, change `root_path_corr`
-echo "{\"overwrite\": true, \"executor\": \"cpu-low\", \"dict_corr\": {\"root_path_corr\": \"$TMPDIR/../../illum_corr_images/\", \"A01_C01\": \"20220621_UZH_manual_illumcorr_40x_A01_C01.png\", \"A01_C02\": \"20220621_UZH_manual_illumcorr_40x_A01_C02.png\", \"A02_C03\": \"20220621_UZH_manual_illumcorr_40x_A02_C03.png\"}}" > ${TMPDIR}/args_illum.json
+echo "{\"overwrite\": true, \"executor\": \"cpu-low\", \"dict_corr\": {\"root_path_corr\": \"$TMPDIR/../../../illum_corr_images/\", \"A01_C01\": \"20220621_UZH_manual_illumcorr_40x_A01_C01.png\", \"A01_C02\": \"20220621_UZH_manual_illumcorr_40x_A01_C02.png\", \"A02_C03\": \"20220621_UZH_manual_illumcorr_40x_A02_C03.png\"}}" > ${TMPDIR}/args_illum.json
 fractal task add-subtask $WF_ID "Illumination correction" --args-file ${TMPDIR}/args_illum.json
 
 echo "{\"executor\": \"cpu-low\"}" > ${TMPDIR}/args_replicate.json