Switch to fractal-task-tools

Author: tcompa

pyproject.toml

@@ -27,7 +27,7 @@ authors = [
 # Required Python version and dependencies
 requires-python = ">=3.10"
 dependencies = [
-    "fractal-tasks-core==1.4.2","ngio==0.1.6",
+    "fractal-tasks-core==1.4.2","ngio==0.1.6", "fractal-task-tools==0.0.8",
 ]
 
 # Optional dependencies (e.g. for `pip install -e ".[dev]"`, see

src/fractal_helper_tasks/convert_2D_segmentation_to_3D.py

@@ -273,7 +273,7 @@ def convert_2D_segmentation_to_3D(
 
 
 if __name__ == "__main__":
-    from fractal_tasks_core.tasks._utils import run_fractal_task
+    from fractal_task_tools.task_wrapper import run_fractal_task
 
     run_fractal_task(
         task_function=convert_2D_segmentation_to_3D,

src/fractal_helper_tasks/dev/create_manifest.py

@@ -1,7 +1,9 @@
 """Fractal Task list for Fractal Helper Tasks."""
 
-from fractal_tasks_core.dev.task_models import ParallelTask
+from fractal_task_tools.task_models import ParallelTask
 
+AUTHORS = "Joel Luethi"
+DOCS_LINK = "https://github.com/jluethi/fractal-helper-tasks"
 TASK_LIST = [
     ParallelTask(
         name="Drop T Dimension",

src/fractal_helper_tasks/dev/task_list.py

@@ -117,7 +117,7 @@ def drop_t_dimension(
 
 
 if __name__ == "__main__":
-    from fractal_tasks_core.tasks._utils import run_fractal_task
+    from fractal_task_tools.task_wrapper import run_fractal_task
 
     run_fractal_task(
         task_function=drop_t_dimension,

src/fractal_helper_tasks/drop_t_dimension.py

@@ -136,7 +136,7 @@ def rechunk_zarr(
 
 
 if __name__ == "__main__":
-    from fractal_tasks_core.tasks._utils import run_fractal_task
+    from fractal_task_tools.task_wrapper import run_fractal_task
 
     run_fractal_task(
         task_function=rechunk_zarr,