small fixes

Author: rhornb

src/ilastik_tasks/ilastik_pixel_classification_segmentation.py

@@ -113,7 +113,7 @@ def segment_ROI(
 
     # Get foreground class and reshape to 3D
     ilastik_output = np.squeeze(ilastik_output[..., foreground_class])
-    print(f"{ilastik_output.shape=} after foreground class selection")
+    logger.info(f"{ilastik_output.shape=} after foreground class selection")
 
     # take mask of regions above threshold
     ilastik_labels = ilastik_output > threshold

tests/test_ilastik_pixel_classification_segmentation.py

@@ -16,7 +16,6 @@ def test_data_dir_3d(tmp_path: Path, zenodo_zarr_3d: list) -> str:
     """
     Copy a test-data folder into a temporary folder.
     """
-    tmp_path = Path("/data/active/rhornb/fractal/pytest/")
     dest_dir = (tmp_path / "ilastik_data_3d").as_posix()
     if Path(dest_dir).exists():
         shutil.rmtree(dest_dir)