Merge pull request #817 from fractal-analytics-platform/753-use-new-zenodo-datasets-in-tests

Use new zenodo datasets in tests

Author: tcompa

CHANGELOG.md

@@ -1,6 +1,12 @@
 **Note**: Numbers like (\#123) point to closed Pull Requests on the fractal-tasks-core repository.
 
+# Unreleased
+
+* Testing
+    * Use latest version of Zenodo tiny-ome-zarr dataset (\#817).
+
 # 1.3.0
+
 * Tasks:
     * `image_glob_patterns` are renamed to `include_glob_patterns` in Convert Cellvoyager to OME-Zarr (regular & multiplexing) (\#812).
     * Convert Cellvoyager to OME-Zarr (regular & multiplexing) gain exclusion patterns to exclude specific patterns of images from being processed (\#812).
@@ -16,7 +22,7 @@
 # 1.2.1
 * Core-library
     * Add `create_roi_table_from_df_list` library function in `fractal_tasks_core.v1.roi`: It combines a list of ROI table dataframes into an AnnData ROI table and handles repeating labels (\#811).
-    * Move `create_well_acquisition_dict` & `_split_well_path_image_path` from fractal_tasks_core.tasks._registration_utils.py & fractal_tasks_core.tasks._zarr_utils into fractal_tasks_core.utils (\#811).
+    * Move `create_well_acquisition_dict` & `_split_well_path_image_path` from `fractal_tasks_core.tasks._registration_utils.py` & `fractal_tasks_core.tasks._zarr_utils` into `fractal_tasks_core.utils` (\#811).
 * Tasks:
     * Fixes issue 810 for Cellpose task: Avoids creating duplicated entries in ROI tables when masking ROI table input was used (\#811).
 

tests/tasks/conftest.py

@@ -80,7 +80,7 @@ def zenodo_zarr(testdata_path: Path) -> list[str]:
     """
 
     # 1 Download Zarrs from Zenodo
-    DOI = "10.5281/zenodo.10257149"
+    DOI = "10.5281/zenodo.13305156"
     DOI_slug = DOI.replace("/", "_").replace(".", "_")
     platenames = ["plate.zarr", "plate_mip.zarr"]
     rootfolder = testdata_path / DOI_slug

tests/tasks/test_unit_copy_hcs.py

@@ -32,6 +32,7 @@
         "columns": [{"name": "03"}],
         "rows": [{"name": "B"}],
         "wells": [{"columnIndex": 0, "path": "B/03", "rowIndex": 0}],
+        "version": "0.4",
     }
 }