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1 | 1 | # Fractal Tasks Core |
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| 3 | +<p align="center"> |
| 4 | + <img src="https://github.com/user-attachments/assets/0a4d8d81-3ca8-4e5e-9c99-9a593e4c132c" alt="Fractal tasks core logo" width="400"> |
| 5 | +</p> |
| 6 | + |
3 | 7 | [](https://pypi.org/project/fractal-tasks-core/) |
4 | 8 | [](https://opensource.org/licenses/BSD-3-Clause) |
5 | 9 | [](https://github.com/fractal-analytics-platform/fractal-tasks-core/actions/workflows/ci_pip.yml) |
6 | 10 | [](https://htmlpreview.github.io/?https://github.com/fractal-analytics-platform/fractal-tasks-core/blob/python-coverage-comment-action-data/htmlcov/index.html) |
7 | 11 | [](https://fractal-analytics-platform.github.io/fractal-tasks-core) |
8 | 12 |
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9 | | - |
10 | | -<table> |
11 | | - <tr> |
12 | | - <td align="left" style="border: none;"> |
13 | | - Fractal Tasks Core is the official task package for the <a href="https://fractal-analytics-platform.github.io/">Fractal</a> framework. It offers essential tools for building and running tasks within the framework, along with a set of ready-to-use tasks for processing bioimaging data in the OME-Zarr format. Key functionalities include OME-Zarr conversion, image registration, segmentation, and measurement. |
14 | | - </td> |
15 | | - <td align="right" style="border: none;"> |
16 | | - <img src="https://github.com/user-attachments/assets/0a4d8d81-3ca8-4e5e-9c99-9a593e4c132c" alt="Fractal tasks core logo" width="800"> |
17 | | - </td> |
18 | | - </tr> |
19 | | -</table> |
| 13 | +Fractal tasks core is the official task package for the [Fractal](https://fractal-analytics-platform.github.io/) framework. It provides essential tools for building Fractal tasks, helpful utility functions, and a collection of ready-to-use tasks for processing bioimaging data. These tasks include OME-Zarr conversion, image registration, segmentation, and measurements. |
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21 | 15 |  |
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23 | 17 | [Fractal](https://fractal-analytics-platform.github.io/) is a framework developed at the [BioVisionCenter](https://www.biovisioncenter.uzh.ch/en.html) to process bioimaging data at scale in the OME-Zarr format and prepare the images for interactive visualization. |
24 | 18 |
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25 | 19 | ## Core Library Components |
26 | 20 | This repository includes several core sub-packages: |
27 | | -- **NGFF Sub-package**: Validates OME-Zarr metadata and provides utilities for reading and writing it. |
| 21 | +- **NGFF Sub-package**: Validates OME-Zarr metadata and provides utilities for reading and writing it. |
28 | 22 | - **Tables Sub-package**: Handles AnnData tables for ROIs and features, including reading and writing operations. (See the [Fractal table specification](https://fractal-analytics-platform.github.io/fractal-tasks-core/tables/)). |
29 | 23 | - **ROI Sub-package**: Manages ROI-related table processing. |
30 | 24 | - **Dev Sub-package**: Handles Fractal manifest creation and task validation for the Fractal server. |
31 | 25 |
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32 | | -The NGFF, Tables & ROI Sub-package functionality will get replaced by functionality in [ngio](https://github.com/fractal-analytics-platform/ngio) over the coming months. |
| 26 | +The NGFF, Tables & ROI Sub-package functionality will get replaced by functionality in [ngio](https://github.com/fractal-analytics-platform/ngio) over the coming months. |
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34 | 28 |
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35 | 29 | ## Documentation |
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