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# Fractal Tasks Core
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<p align="center">
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<img src="https://github.com/user-attachments/assets/0a4d8d81-3ca8-4e5e-9c99-9a593e4c132c" alt="Fractal tasks core logo" width="400">
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[![PyPI version](https://img.shields.io/pypi/v/fractal-tasks-core?color=gree)](https://pypi.org/project/fractal-tasks-core/)
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[![License](https://img.shields.io/badge/License-BSD_3--Clause-blue.svg)](https://opensource.org/licenses/BSD-3-Clause)
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[![CI Status](https://github.com/fractal-analytics-platform/fractal-tasks-core/actions/workflows/ci_pip.yml/badge.svg)](https://github.com/fractal-analytics-platform/fractal-tasks-core/actions/workflows/ci_pip.yml)
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[![Coverage](https://raw.githubusercontent.com/fractal-analytics-platform/fractal-tasks-core/python-coverage-comment-action-data/badge.svg)](https://htmlpreview.github.io/?https://github.com/fractal-analytics-platform/fractal-tasks-core/blob/python-coverage-comment-action-data/htmlcov/index.html)
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[![Documentation Status](https://github.com/fractal-analytics-platform/fractal-tasks-core/actions/workflows/documentation.yaml/badge.svg)](https://fractal-analytics-platform.github.io/fractal-tasks-core)
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Fractal Tasks Core is the official task package for the <a href="https://fractal-analytics-platform.github.io/">Fractal</a> framework. It offers essential tools for building and running tasks within the framework, along with a set of ready-to-use tasks for processing bioimaging data in the OME-Zarr format. Key functionalities include OME-Zarr conversion, image registration, segmentation, and measurement.
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<img src="https://github.com/user-attachments/assets/0a4d8d81-3ca8-4e5e-9c99-9a593e4c132c" alt="Fractal tasks core logo" width="800">
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Fractal tasks core is the official task package for the [Fractal](https://fractal-analytics-platform.github.io/) framework. It provides essential tools for building Fractal tasks, helpful utility functions, and a collection of ready-to-use tasks for processing bioimaging data. These tasks include OME-Zarr conversion, image registration, segmentation, and measurements.
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![Fractal_overview_small](https://github.com/user-attachments/assets/666c8797-2594-4b8e-b1d2-b43fca66d1df)
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[Fractal](https://fractal-analytics-platform.github.io/) is a framework developed at the [BioVisionCenter](https://www.biovisioncenter.uzh.ch/en.html) to process bioimaging data at scale in the OME-Zarr format and prepare the images for interactive visualization.
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## Core Library Components
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This repository includes several core sub-packages:
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- **NGFF Sub-package**: Validates OME-Zarr metadata and provides utilities for reading and writing it.
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- **NGFF Sub-package**: Validates OME-Zarr metadata and provides utilities for reading and writing it.
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- **Tables Sub-package**: Handles AnnData tables for ROIs and features, including reading and writing operations. (See the [Fractal table specification](https://fractal-analytics-platform.github.io/fractal-tasks-core/tables/)).
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- **ROI Sub-package**: Manages ROI-related table processing.
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- **Dev Sub-package**: Handles Fractal manifest creation and task validation for the Fractal server.
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The NGFF, Tables & ROI Sub-package functionality will get replaced by functionality in [ngio](https://github.com/fractal-analytics-platform/ngio) over the coming months.
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The NGFF, Tables & ROI Sub-package functionality will get replaced by functionality in [ngio](https://github.com/fractal-analytics-platform/ngio) over the coming months.
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## Documentation

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