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@tcompa tcompa commented May 13, 2025

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 7 updates, 0 removals

  - Updating platformdirs (4.3.7 -> 4.3.8)
  - Updating charset-normalizer (3.4.1 -> 3.4.2)
  - Updating click (8.1.8 -> 8.2.0)
  - Updating scipy (1.15.2 -> 1.15.3)
  - Updating polars (1.28.1 -> 1.29.0)
  - Updating xarray (2025.3.1 -> 2025.4.0)
  - Updating ngio (0.2.4 -> 0.2.8)

Writing lock file

Outdated dependencies before PR:

anndata                                            0.10.9             
astropy                                        (!) 7.0.1              
astropy-iers-data                              (!) 0.2025.4.28.0.37.27
asttokens                                      (!) 2.4.1              
cellpose                                       (!) 2.2.3              
charset-normalizer                                 3.4.1              
click                                              8.1.8              
eval-type-backport                                 0.1.3              
executing                                      (!) 0.10.0             
fastremap                                      (!) 1.15.2             
filelock                                           3.13.4             
fonttools                                      (!) 4.57.0             
imageio-ffmpeg                                 (!) 0.4.9              
ipywidgets                                     (!) 8.1.6              
jupyter-server                                 (!) 2.15.0             
jupyterlab                                     (!) 4.4.1              
jupyterlab-widgets                             (!) 3.0.14             
lxml                                               4.9.4              
matplotlib                                     (!) 3.10.1             
napari                                         (!) 0.5.6              
napari-assistant                               (!) 0.4.14             
napari-segment-blobs-and-things-with-membranes (!) 0.3.8              
napari-skimage-regionprops                     (!) 0.8.2              
ngio                                               0.2.4              
notebook                                       (!) 7.4.1              
numcodecs                                          0.15.1             
numpy                                              2.1.0              
nvidia-cublas-cu12                             (!) 12.6.4.1           
nvidia-cuda-cupti-cu12                         (!) 12.6.80            
nvidia-cuda-nvrtc-cu12                         (!) 12.6.77            
nvidia-cuda-runtime-cu12                       (!) 12.6.77            
nvidia-cudnn-cu12                              (!) 9.5.1.17           
nvidia-cufft-cu12                              (!) 11.3.0.4           
nvidia-cufile-cu12                             (!) 1.11.1.6           
nvidia-curand-cu12                             (!) 10.3.7.77          
nvidia-cusolver-cu12                           (!) 11.7.1.2           
nvidia-cusparse-cu12                           (!) 12.5.4.2           
nvidia-cusparselt-cu12                         (!) 0.6.3              
nvidia-nccl-cu12                               (!) 2.26.2             
nvidia-nvjitlink-cu12                          (!) 12.6.85            
nvidia-nvtx-cu12                               (!) 12.6.77            
platformdirs                                       4.3.7              
polars                                             1.28.1             
pooch                                              1.8.0              
psygnal                                        (!) 0.12.0             
pydantic                                           2.8.2              
pydantic-core                                      2.20.1             
pytest                                         (!) 7.4.4              
roifile                                        (!) 2025.2.20          
scipy                                              1.15.2             
setuptools                                         80.0.0             
snowballstemmer                                (!) 2.2.0              
stack-data                                     (!) 0.5.1              
stackview                                      (!) 0.8.2              
tifffile                                       (!) 2025.3.30          
vispy                                          (!) 0.14.3             
xarray                                             2025.3.1           
zarr                                               2.18.7             

Outdated dependencies after PR:

anndata                                            0.10.9    0.11.4    
asttokens                                      (!) 2.4.1     3.0.0     
cellpose                                       (!) 2.2.3     4.0.2     
eval-type-backport                                 0.1.3     0.2.2     
executing                                      (!) 0.10.0    2.2.0     
filelock                                           3.13.4    3.18.0    
imageio-ffmpeg                                 (!) 0.4.9     0.6.0     
lxml                                               4.9.4     5.4.0     
napari-segment-blobs-and-things-with-membranes (!) 0.3.8     0.3.12    
napari-skimage-regionprops                     (!) 0.8.2     0.10.1    
numcodecs                                          0.15.1    0.16.0    
numpy                                              2.1.0     2.2.5     
nvidia-cublas-cu12                             (!) 12.6.4.1  12.9.0.13 
nvidia-cuda-cupti-cu12                         (!) 12.6.80   12.9.19   
nvidia-cuda-nvrtc-cu12                         (!) 12.6.77   12.9.41   
nvidia-cuda-runtime-cu12                       (!) 12.6.77   12.9.37   
nvidia-cudnn-cu12                              (!) 9.5.1.17  9.10.0.56 
nvidia-cufft-cu12                              (!) 11.3.0.4  11.4.0.6  
nvidia-cufile-cu12                             (!) 1.11.1.6  1.14.0.30 
nvidia-curand-cu12                             (!) 10.3.7.77 10.3.10.19
nvidia-cusolver-cu12                           (!) 11.7.1.2  11.7.4.40 
nvidia-cusparse-cu12                           (!) 12.5.4.2  12.5.9.5  
nvidia-cusparselt-cu12                         (!) 0.6.3     0.7.1     
nvidia-nccl-cu12                               (!) 2.26.2    2.26.5    
nvidia-nvjitlink-cu12                          (!) 12.6.85   12.9.41   
nvidia-nvtx-cu12                               (!) 12.6.77   12.9.19   
pooch                                              1.8.0     1.8.2     
pydantic                                           2.8.2     2.11.4    
pydantic-core                                      2.20.1    2.34.1    
pytest                                         (!) 7.4.4     8.3.5     
stack-data                                     (!) 0.5.1     0.6.3     
stackview                                      (!) 0.8.2     0.17.0    
vispy                                          (!) 0.14.3    0.15.0    
zarr                                               2.18.7    3.0.7     

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

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@tcompa tcompa marked this pull request as ready for review May 13, 2025 11:58
@tcompa tcompa merged commit e86d4a8 into main May 13, 2025
16 checks passed
@tcompa tcompa deleted the poetry-update branch May 13, 2025 11:58
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3 participants