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@tcompa tcompa commented Jul 15, 2025

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 5 updates, 0 removals

  - Updating certifi (2025.6.15 -> 2025.7.14)
  - Updating dask (2025.5.1 -> 2025.7.0)
  - Updating distributed (2025.5.1 -> 2025.7.0)
  - Updating aiohttp (3.12.13 -> 3.12.14)
  - Updating xarray (2025.7.0 -> 2025.7.1)

Writing lock file

Outdated dependencies before PR:

aiohttp                                            3.12.13           
anndata                                            0.10.9            
astropy-iers-data                              (!) 0.2025.7.7.0.39.39
asttokens                                      (!) 2.4.1             
cellpose                                       (!) 2.2.3             
certifi                                            2025.6.15         
dask                                               2025.5.1          
distributed                                        2025.5.1          
eval-type-backport                                 0.1.3             
executing                                      (!) 0.10.0            
filelock                                           3.13.4            
imageio-ffmpeg                                 (!) 0.4.9             
lxml                                               5.4.0             
napari-segment-blobs-and-things-with-membranes (!) 0.3.8             
napari-skimage-regionprops                     (!) 0.8.2             
ngio                                               0.2.10            
numcodecs                                          0.15.1            
numpy                                              2.1.0             
nvidia-cublas-cu12                             (!) 12.6.4.1          
nvidia-cuda-cupti-cu12                         (!) 12.6.80           
nvidia-cuda-nvrtc-cu12                         (!) 12.6.77           
nvidia-cuda-runtime-cu12                       (!) 12.6.77           
nvidia-cudnn-cu12                              (!) 9.5.1.17          
nvidia-cufft-cu12                              (!) 11.3.0.4          
nvidia-cufile-cu12                             (!) 1.11.1.6          
nvidia-curand-cu12                             (!) 10.3.7.77         
nvidia-cusolver-cu12                           (!) 11.7.1.2          
nvidia-cusparse-cu12                           (!) 12.5.4.2          
nvidia-cusparselt-cu12                         (!) 0.6.3             
nvidia-nccl-cu12                               (!) 2.26.2            
nvidia-nvjitlink-cu12                          (!) 12.6.85           
nvidia-nvtx-cu12                               (!) 12.6.77           
pooch                                              1.8.0             
pydantic                                           2.8.2             
pydantic-core                                      2.20.1            
pytest                                         (!) 7.4.4             
stack-data                                     (!) 0.5.1             
stackview                                      (!) 0.8.2             
xarray                                             2025.7.0          
zarr                                               2.18.7            

Outdated dependencies after PR:

anndata                                            0.10.9    0.11.4    
asttokens                                      (!) 2.4.1     3.0.0     
cellpose                                       (!) 2.2.3     4.0.6     
eval-type-backport                                 0.1.3     0.2.2     
executing                                      (!) 0.10.0    2.2.0     
filelock                                           3.13.4    3.18.0    
imageio-ffmpeg                                 (!) 0.4.9     0.6.0     
lxml                                               5.4.0     6.0.0     
napari-segment-blobs-and-things-with-membranes (!) 0.3.8     0.3.12    
napari-skimage-regionprops                     (!) 0.8.2     0.10.1    
ngio                                               0.2.10    0.3.4     
numcodecs                                          0.15.1    0.16.1    
numpy                                              2.1.0     2.3.1     
nvidia-cublas-cu12                             (!) 12.6.4.1  12.9.1.4  
nvidia-cuda-cupti-cu12                         (!) 12.6.80   12.9.79   
nvidia-cuda-nvrtc-cu12                         (!) 12.6.77   12.9.86   
nvidia-cuda-runtime-cu12                       (!) 12.6.77   12.9.79   
nvidia-cudnn-cu12                              (!) 9.5.1.17  9.10.2.21 
nvidia-cufft-cu12                              (!) 11.3.0.4  11.4.1.4  
nvidia-cufile-cu12                             (!) 1.11.1.6  1.14.1.1  
nvidia-curand-cu12                             (!) 10.3.7.77 10.3.10.19
nvidia-cusolver-cu12                           (!) 11.7.1.2  11.7.5.82 
nvidia-cusparse-cu12                           (!) 12.5.4.2  12.5.10.65
nvidia-cusparselt-cu12                         (!) 0.6.3     0.7.1     
nvidia-nccl-cu12                               (!) 2.26.2    2.27.5    
nvidia-nvjitlink-cu12                          (!) 12.6.85   12.9.86   
nvidia-nvtx-cu12                               (!) 12.6.77   12.9.79   
pooch                                              1.8.0     1.8.2     
pydantic                                           2.8.2     2.11.7    
pydantic-core                                      2.20.1    2.35.2    
pytest                                         (!) 7.4.4     8.4.1     
stack-data                                     (!) 0.5.1     0.6.3     
stackview                                      (!) 0.8.2     0.18.0    
zarr                                               2.18.7    3.1.0     

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

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@tcompa tcompa marked this pull request as ready for review July 15, 2025 09:52
@tcompa tcompa merged commit 7158182 into main Jul 15, 2025
15 checks passed
@tcompa tcompa deleted the poetry-update branch July 15, 2025 09:53
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2 participants