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lines changed Original file line number Diff line number Diff line change 1616 conda create -n umap_0.5.4 umap-learn=0.5.4 -c conda-forge -y
1717 conda create -n SeuratIntegrate_bbknn python scipy scanpy bbknn -c conda-forge -c bioconda -y
1818 conda create -n SeuratIntegrate_scanorama python scanorama scipy -c conda-forge -c bioconda -y
19- conda create -n SeuratIntegrate_scvi-tools python scipy scanpy scvi-tools mkl mkl-include setuptools cmake pip -c conda-forge
19+ conda create -n SeuratIntegrate_scvi-tools python=3.12 scipy scanpy scvi-tools mkl mkl-include setuptools cmake pip -c conda-forge
2020 shell : bash -l {0}
2121 working-directory : ${{ inputs.working-directory }}
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Original file line number Diff line number Diff line change @@ -101,7 +101,7 @@ Collate:
101101 'zzz.R'
102102VignetteBuilder: knitr
103103Config/Needs/website: rmarkdown
104- URL: https://github.com/cbib/Seurat-Integrate , https://cbib .github.io/Seurat-Integrate /
104+ URL: https://github.com/fspecque/test , https://fspecque .github.io/test /
105105BugReports: https://github.com/cbib/Seurat-Integrate/issues
106106Remotes: SeuratData=github::satijalab/seurat-data,
107107 github::theislab/kBET,
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