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1 parent d454a3f commit 8c9119dCopy full SHA for 8c9119d
.github/actions/setup-conda/action.yaml
@@ -19,12 +19,7 @@ runs:
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pip install bbknn
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conda deactivate
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conda create -n SeuratIntegrate_scanorama python scanorama scipy -c conda-forge -c bioconda -y
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- conda create -n SeuratIntegrate_scvi-tools python=3.12 pip -c conda-forge
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- conda activate SeuratIntegrate_scvi-tools
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- pip install jax
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- pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
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- pip install scvi-tools scanpy
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- conda deactivate
+ conda create -n SeuratIntegrate_scvi-tools python pip scvi-tools -c conda-forge
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shell: bash -l {0}
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working-directory: ${{ inputs.working-directory }}
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