test

Author: fspecque

.github/actions/setup-conda/action.yaml

@@ -10,13 +10,13 @@ runs:
         with:
           auto-activate-base: true
           activate-environment: ""
-      
+
       - name: Setup envs
         run: |
           conda create -n umap_0.5.4 umap-learn=0.5.4 -c conda-forge -y
           conda create -n SeuratIntegrate_bbknn python scipy scanpy bbknn libtiff=4.5.1 -c conda-forge -c bioconda -y
           conda create -n SeuratIntegrate_scanorama python scanorama scipy libtiff=4.5.1 -c conda-forge -c bioconda -y
-          conda create -n SeuratIntegrate_scvi-tools python scipy scanpy 'scvi-tools>1.0' mkl mkl-include setuptools cmake libtiff=4.5.1 pip -c conda-forge
+          conda create -n SeuratIntegrate_scvi-tools python scipy scanpy 'scvi-tools>1.0' 'lightning mkl>=2.3' mkl-include setuptools cmake libtiff=4.5.1 pip -c conda-forge
           conda activate SeuratIntegrate_scvi-tools
           pip install jaxlib==0.4.27
           conda deactivate