test

Author: fspecque

.github/actions/setup-conda/action.yaml

@@ -15,6 +15,9 @@ runs:
         run: |
           conda create -n umap_0.5.4 umap-learn=0.5.4 -c conda-forge -y
           conda create -n SeuratIntegrate_bbknn python scipy scanpy bbknn -c conda-forge -c bioconda -y
+          conda activate SeuratIntegrate_bbknn
+          pip install bbknn
+          conda deactivate
           conda create -n SeuratIntegrate_scanorama python scanorama scipy -c conda-forge -c bioconda -y
           conda create -n SeuratIntegrate_scvi-tools python=3.12 pip -c conda-forge
           conda activate  SeuratIntegrate_scvi-tools