Merge pull request #44 from fusion-energy/develop

adding tet mesh support

Author: shimwell

.circleci/config.yml

@@ -7,7 +7,7 @@ jobs:
   # test:
   build:
     docker:
-      - image: ghcr.io/fusion-energy/paramak-neutronics:dependencies
+      - image: ghcr.io/fusion-energy/openmc-dagmc-wrapper:dependencies
     steps:
       - checkout
       - run:

.github/workflows/autopep8.yml

@@ -0,0 +1,24 @@
+name: autopep8
+on: pull_request
+jobs:
+  autopep8:
+    # Check if the PR is not from a fork
+    if: github.event.pull_request.head.repo.full_name == github.repository
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          ref: ${{ github.head_ref }}
+      - name: autopep8
+        id: autopep8
+        uses: peter-evans/autopep8@v1
+        with:
+          args: --exclude=make_faceteted_neutronics_model.py --exit-code --recursive --in-place --aggressive --aggressive .
+      - name: Commit autopep8 changes
+        if: steps.autopep8.outputs.exit-code == 2
+        run: |
+          git config --global user.name 'autopep8'
+          git config --global user.email 'autopep8@users.noreply.github.com'
+          git commit -am "Automated autopep8 fixes"
+          git push

docs/source/conf.py

@@ -148,7 +148,12 @@
 
 # One entry per manual page. List of tuples
 # (source start file, name, description, authors, manual section).
-man_pages = [(master_doc, "paramak-neutronics", "Paramak Documentation", [author], 1)]
+man_pages = [
+    (master_doc,
+     "paramak-neutronics",
+     "Paramak Documentation",
+     [author],
+     1)]
 
 
 # -- Options for Texinfo output ----------------------------------------------

docs/source/index.rst

@@ -20,14 +20,14 @@ neutronics simulations of fusion reactors in a reproducible manner.
 
 The source code is distributed with a permissive open-source
 license (MIT) and is available from the GitHub repository 
-`https://github.com/fusion-energy/paramak-neutronics <https://github.com/fusion-energy/paramak-neutronics>`_
+`https://github.com/fusion-energy/openmc-dagmc-wrapper <https://github.com/fusion-energy/openmc-dagmc-wrapper>`_
 
 
 Features
 --------
 
 In general the openmc-dagmc-wrapper takes a DAGMC geometry in the form of a h5m
-file and helps all tallies, materials and a source term to be easily added to 
+file and helps adding tallies, materials and a source term to be easily added to 
 create a complete neutronics model. The package will also post processes the
 results of the neutronics simulation to allow easy access to the outputs.
 The simulated results are extracted from the statepoint.h5 file that
@@ -51,5 +51,10 @@ The `OpenMC workflow <https://github.com/fusion-energy/neutronics_workflow>`_
 demonstrates the use of this package along side others in a complete neutronics
 tool chain.
 
+`CAD-to-h5m <https://github.com/fusion-energy/cad_to_h5m>`_ makes use of the
+`Cubit API <https://coreform.com/products/coreform-cubit/>`_ to convert CAD
+files (stp or sat format) into `DAGMC <https://svalinn.github.io/DAGMC/>`_ 
+compatible h5m files for use in DAGMC enabled neutronics codes.
+
 For magnetic confinement fusion simulations you might want to use the parametric-plasma-source
 `Git repository <https://github.com/open-radiation-sources/parametric-plasma-source>`_ 

examples/segmented_blanket_ball_reactor.py

@@ -59,7 +59,8 @@ def make_model_and_simulate():
                 temperature=blanket_rear_wall_coolant_temperature,
                 pressure=blanket_rear_wall_coolant_pressure,
             ),
-            nmm.Material.from_library(name=blanket_rear_wall_structural_material),
+            nmm.Material.from_library(
+                name=blanket_rear_wall_structural_material),
         ],
         fracs=[
             blanket_rear_wall_coolant_fraction,
@@ -156,7 +157,8 @@ def make_model_and_simulate():
                 temperature=center_column_shield_coolant_temperature_k,
                 pressure=center_column_shield_coolant_pressure_Pa,
             ),
-            nmm.Material.from_library(name=center_column_shield_structural_material),
+            nmm.Material.from_library(
+                name=center_column_shield_structural_material),
         ],
         fracs=[
             center_column_shield_coolant_fraction,
@@ -184,8 +186,10 @@ def make_model_and_simulate():
                 temperature=inboard_tf_coils_coolant_temperature_k,
                 pressure=inboard_tf_coils_coolant_pressure_Pa,
             ),
-            nmm.Material.from_library(name=inboard_tf_coils_conductor_material),
-            nmm.Material.from_library(name=inboard_tf_coils_structure_material),
+            nmm.Material.from_library(
+                name=inboard_tf_coils_conductor_material),
+            nmm.Material.from_library(
+                name=inboard_tf_coils_structure_material),
         ],
         fracs=[
             inboard_tf_coils_coolant_fraction,