Built-in templates: Report on R_LIBS_USER, R_LIBS_SITE, and R_LIBS

Author: HenrikBengtsson

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: future.batchtools
-Version: 0.21.0-9002
+Version: 0.21.0-9003
 Depends:
     R (>= 3.2.0),
     parallelly,

inst/templates/bash.tmpl

@@ -86,6 +86,9 @@ if ! command -v <%= rscript[1] %> &> /dev/null; then
     exit 1
 fi
 echo "- Rscript version: $(<%= paste(rscript, collapse = " ") %> --version)"
+echo "- R_LIBS_USER=${R_LIBS_USER:-<not set>}"
+echo "- R_LIBS_SITE=${R_LIBS_SITE:-<not set>}"
+echo "- R_LIBS=${R_LIBS:-<not set>}"
 echo "- Rscript library paths: $(<%= rscript_call %> -e "cat(shQuote(.libPaths()), sep = ' ')")"
 echo
 

inst/templates/lsf.tmpl

@@ -111,6 +111,9 @@ if ! command -v <%= rscript[1] %> &> /dev/null; then
     exit 1
 fi
 echo "- Rscript version: $(<%= paste(rscript, collapse = " ") %> --version)"
+echo "- R_LIBS_USER=${R_LIBS_USER:-<not set>}"
+echo "- R_LIBS_SITE=${R_LIBS_SITE:-<not set>}"
+echo "- R_LIBS=${R_LIBS:-<not set>}"
 echo "- Rscript library paths: $(<%= rscript_call %> -e "cat(shQuote(.libPaths()), sep = ' ')")"
 echo
 

inst/templates/openlava.tmpl

@@ -111,6 +111,9 @@ if ! command -v <%= rscript[1] %> &> /dev/null; then
     exit 1
 fi
 echo "- Rscript version: $(<%= paste(rscript, collapse = " ") %> --version)"
+echo "- R_LIBS_USER=${R_LIBS_USER:-<not set>}"
+echo "- R_LIBS_SITE=${R_LIBS_SITE:-<not set>}"
+echo "- R_LIBS=${R_LIBS:-<not set>}"
 echo "- Rscript library paths: $(<%= rscript_call %> -e "cat(shQuote(.libPaths()), sep = ' ')")"
 echo
 

inst/templates/sge.tmpl

@@ -120,6 +120,9 @@ if ! command -v <%= rscript[1] %> &> /dev/null; then
     exit 1
 fi
 echo "- Rscript version: $(<%= paste(rscript, collapse = " ") %> --version)"
+echo "- R_LIBS_USER=${R_LIBS_USER:-<not set>}"
+echo "- R_LIBS_SITE=${R_LIBS_SITE:-<not set>}"
+echo "- R_LIBS=${R_LIBS:-<not set>}"
 echo "- Rscript library paths: $(<%= rscript_call %> -e "cat(shQuote(.libPaths()), sep = ' ')")"
 echo
 

inst/templates/slurm.tmpl

@@ -110,6 +110,9 @@ if ! command -v <%= rscript[1] %> &> /dev/null; then
     exit 1
 fi
 echo "- Rscript version: $(<%= paste(rscript, collapse = " ") %> --version)"
+echo "- R_LIBS_USER=${R_LIBS_USER:-<not set>}"
+echo "- R_LIBS_SITE=${R_LIBS_SITE:-<not set>}"
+echo "- R_LIBS=${R_LIBS:-<not set>}"
 echo "- Rscript library paths: $(<%= rscript_call %> -e "cat(shQuote(.libPaths()), sep = ' ')")"
 echo
 

inst/templates/torque.tmpl

@@ -114,6 +114,9 @@ if ! command -v <%= rscript[1] %> &> /dev/null; then
     exit 1
 fi
 echo "- Rscript version: $(<%= paste(rscript, collapse = " ") %> --version)"
+echo "- R_LIBS_USER=${R_LIBS_USER:-<n/a>}"
+echo "- R_LIBS_SITE=${R_LIBS_SITE:-<n/a>}"
+echo "- R_LIBS=${R_LIBS:-<n/a>}"
 echo "- Rscript library paths: $(<%= rscript_call %> -e "cat(shQuote(.libPaths()), sep = ' ')")"
 echo