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REVDEP: Check 5 packages [ci skip]
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‎revdep/README.md‎

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# Platform
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|field |value |
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|:--------|:----------------------------|
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|version |R version 4.2.2 (2022-10-31) |
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|os |Ubuntu 22.04.2 LTS |
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|system |x86_64, linux-gnu |
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|ui |X11 |
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|language |en |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |Europe/Oslo |
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|date |2023-02-24 |
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|pandoc |2.9.2.1 @ /usr/bin/pandoc |
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|field |value |
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|:--------|:----------------------------------------------------------------------|
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|version |R version 4.3.2 (2023-10-31) |
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|os |Rocky Linux 8.8 (Green Obsidian) |
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|system |x86_64, linux-gnu |
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|ui |X11 |
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|language |(EN) |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |America/Los_Angeles |
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|date |2023-12-19 |
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|pandoc |3.1.10 @ /wynton/home/cbi/shared/software/CBI/pandoc-3.1.10/bin/pandoc |
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# Dependencies
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|package |old |new |Δ |
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|:-----------------|:------|:------|:--|
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|future.batchtools |0.11.0 |0.12.0 |* |
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|backports |1.4.1 |1.4.1 | |
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|base64url |1.4 |1.4 | |
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|batchtools |0.9.16 |0.9.16 | |
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|brew |1.0-8 |1.0-8 | |
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|checkmate |2.1.0 |2.1.0 | |
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|cli |3.6.0 |3.6.0 | |
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|codetools |0.2-19 |0.2-19 | |
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|crayon |1.5.2 |1.5.2 | |
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|data.table |1.14.8 |1.14.8 | |
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|digest |0.6.31 |0.6.31 | |
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|ellipsis |0.3.2 |0.3.2 | |
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|fs |1.6.1 |1.6.1 | |
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|future |1.31.0 |1.31.0 | |
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|globals |0.16.2 |0.16.2 | |
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|glue |1.6.2 |1.6.2 | |
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|hms |1.1.2 |1.1.2 | |
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|lifecycle |1.0.3 |1.0.3 | |
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|listenv |0.9.0 |0.9.0 | |
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|parallelly |1.34.0 |1.34.0 | |
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|pkgconfig |2.0.3 |2.0.3 | |
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|prettyunits |1.1.1 |1.1.1 | |
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|progress |1.2.2 |1.2.2 | |
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|R6 |2.5.1 |2.5.1 | |
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|rappdirs |0.3.3 |0.3.3 | |
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|rlang |1.0.6 |1.0.6 | |
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|stringi |1.7.12 |1.7.12 | |
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|vctrs |0.5.2 |0.5.2 | |
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|withr |2.5.0 |2.5.0 | |
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|package |old |new |Δ |
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|:-----------------|:-------|:-----------|:--|
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|future.batchtools |0.12.0 |0.12.0-9003 |* |
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|backports |1.4.1 |1.4.1 | |
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|base64url |1.4 |1.4 | |
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|batchtools |0.9.17 |0.9.17 | |
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|brew |1.0-10 |1.0-10 | |
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|checkmate |2.3.1 |2.3.1 | |
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|cli |3.6.2 |3.6.2 | |
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|codetools |0.2-19 |0.2-19 | |
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|crayon |1.5.2 |1.5.2 | |
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|data.table |1.14.10 |1.14.10 | |
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|digest |0.6.33 |0.6.33 | |
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|fs |1.6.3 |1.6.3 | |
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|future |1.33.0 |1.33.0 | |
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|globals |0.16.2 |0.16.2 | |
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|glue |1.6.2 |1.6.2 | |
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|hms |1.1.3 |1.1.3 | |
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|lifecycle |1.0.4 |1.0.4 | |
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|listenv |0.9.0 |0.9.0 | |
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|parallelly |1.36.0 |1.36.0 | |
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|pkgconfig |2.0.3 |2.0.3 | |
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|prettyunits |1.2.0 |1.2.0 | |
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|progress |1.2.3 |1.2.3 | |
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|R6 |2.5.1 |2.5.1 | |
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|rappdirs |0.3.3 |0.3.3 | |
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|rlang |1.1.2 |1.1.2 | |
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|stringi |1.8.3 |1.8.3 | |
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|vctrs |0.6.5 |0.6.5 | |
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|withr |2.5.2 |2.5.2 | |
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# Revdeps
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## All (5)
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|package |version |error |warning |note |
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|:----------|:-------|:-----|:-------|:----|
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|[batchtools](problems.md#batchtools)|0.9.16 | | |2 |
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|[batchtools](problems.md#batchtools)|0.9.17 | | |2 |
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|FAMoS |0.3.0 | | | |
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|nncc |1.0.0 | | | |
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|[SimDesign](problems.md#simdesign)|2.10.1 | | |2 |
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|targets |0.14.2 | | | |
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|nncc |1.0.1 | | | |
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|SimDesign |2.13 | | | |
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|[targets](problems.md#targets)|1.4.0 | | |1 |
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‎revdep/problems.md‎

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<details>
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* Version: 0.9.16
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* Version: 0.9.17
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* GitHub: https://github.com/mllg/batchtools
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* Source code: https://github.com/cran/batchtools
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* Date/Publication: 2023-02-03 13:52:38 UTC
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* Number of recursive dependencies: 82
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* Date/Publication: 2023-04-20 14:20:06 UTC
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* Number of recursive dependencies: 84
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Run `revdep_details(, "batchtools")` for more info
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</details>
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## In both
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* checking package dependencies ... NOTE
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* checking dependencies in R code ... NOTE
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```
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Package suggested but not available for checking: ‘doMPI’
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dev1.wynton.ucsf.edu:pid550439: PSM3 can't open nic unit: 0 (err=23)
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dev1.wynton.ucsf.edu:pid550439.R: Unable to create send CQ of size 5080 on mlx5_0: Cannot allocate memory
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dev1.wynton.ucsf.edu:pid550439.R: Unable to initialize verbs NIC /sys/class/infiniband/mlx5_0 (unit 0:0)
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dev1.wynton.ucsf.edu:pid550439: PSM3 can't open nic unit: 0 (err=23)
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dev1.wynton.ucsf.edu:pid550439.R: Unable to create send CQ of size 5080 on mlx5_0: Cannot allocate memory
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dev1.wynton.ucsf.edu:pid550439.R: Unable to initialize verbs NIC /sys/class/infiniband/mlx5_0 (unit 0:0)
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dev1.wynton.ucsf.edu:pid550439: PSM3 can't open nic unit: 0 (err=23)
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dev1.wynton.ucsf.edu:pid550439.R: Unable to create send CQ of size 5080 on mlx5_0: Cannot allocate memory
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dev1.wynton.ucsf.edu:pid550439.R: Unable to initialize verbs NIC /sys/class/infiniband/mlx5_0 (unit 0:0)
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--------------------------------------------------------------------------
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...
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dev1.wynton.ucsf.edu:pid550439.R: Unable to create send CQ of size 5080 on mlx5_0: Cannot allocate memory
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dev1.wynton.ucsf.edu:pid550439.R: Unable to initialize verbs NIC /sys/class/infiniband/mlx5_0 (unit 0:0)
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--------------------------------------------------------------------------
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Open MPI failed an OFI Libfabric library call (fi_endpoint). This is highly
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unusual; your job may behave unpredictably (and/or abort) after this.
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Local host: dev1
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Location: mtl_ofi_component.c:513
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Error: Invalid argument (22)
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--------------------------------------------------------------------------
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```
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* checking Rd cross-references ... NOTE
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* checking for detritus in the temp directory ... NOTE
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```
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Package unavailable to check Rd xrefs: ‘Rmpi’
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Found the following files/directories:
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‘ompi.dev1.34002’
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```
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# SimDesign
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# targets
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<details>
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* Version: 2.10.1
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* GitHub: https://github.com/philchalmers/SimDesign
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* Source code: https://github.com/cran/SimDesign
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* Date/Publication: 2023-02-01 15:30:02 UTC
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* Number of recursive dependencies: 104
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* Version: 1.4.0
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* GitHub: https://github.com/ropensci/targets
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* Source code: https://github.com/cran/targets
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* Date/Publication: 2023-12-11 17:00:02 UTC
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* Number of recursive dependencies: 166
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Run `revdep_details(, "SimDesign")` for more info
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Run `revdep_details(, "targets")` for more info
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</details>
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## In both
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* checking package dependencies ... NOTE
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```
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Package suggested but not available for checking: ‘doMPI’
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```
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* checking installed package size ... NOTE
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```
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installed size is 6.8Mb
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sub-directories of 1Mb or more:
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doc 6.2Mb
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Package suggested but not available for checking: ‘qs’
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```
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