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Merge branch 'develop' of github.com:futureverse/future.batchtools into develop
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‎revdep/README.md‎

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# Platform
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|field |value |
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|:--------|:----------------------------------------------------------------------|
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|version |R version 4.3.2 (2023-10-31) |
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|os |Rocky Linux 8.8 (Green Obsidian) |
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|system |x86_64, linux-gnu |
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|ui |X11 |
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|language |(EN) |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |America/Los_Angeles |
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|date |2023-12-19 |
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|pandoc |3.1.10 @ /wynton/home/cbi/shared/software/CBI/pandoc-3.1.10/bin/pandoc |
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|field |value |
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|:--------|:---------------------------------------------------------|
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|version |R version 4.5.0 (2025-04-11) |
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|os |Rocky Linux 8.10 (Green Obsidian) |
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|system |x86_64, linux-gnu |
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|ui |X11 |
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|language |en |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |America/Los_Angeles |
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|date |2025-06-05 |
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|pandoc |3.6.3 @ /software/c4/cbi/software/pandoc-3.6.3/bin/pandoc |
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|quarto |NA |
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# Dependencies
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|package |old |new |Δ |
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|:-----------------|:-------|:-----------|:--|
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|future.batchtools |0.12.0 |0.12.0-9003 |* |
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|backports |1.4.1 |1.4.1 | |
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|base64url |1.4 |1.4 | |
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|batchtools |0.9.17 |0.9.17 | |
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|brew |1.0-10 |1.0-10 | |
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|checkmate |2.3.1 |2.3.1 | |
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|cli |3.6.2 |3.6.2 | |
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|codetools |0.2-19 |0.2-19 | |
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|crayon |1.5.2 |1.5.2 | |
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|data.table |1.14.10 |1.14.10 | |
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|digest |0.6.33 |0.6.33 | |
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|fs |1.6.3 |1.6.3 | |
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|future |1.33.0 |1.33.0 | |
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|globals |0.16.2 |0.16.2 | |
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|glue |1.6.2 |1.6.2 | |
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|hms |1.1.3 |1.1.3 | |
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|lifecycle |1.0.4 |1.0.4 | |
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|listenv |0.9.0 |0.9.0 | |
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|parallelly |1.36.0 |1.36.0 | |
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|pkgconfig |2.0.3 |2.0.3 | |
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|prettyunits |1.2.0 |1.2.0 | |
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|progress |1.2.3 |1.2.3 | |
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|R6 |2.5.1 |2.5.1 | |
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|rappdirs |0.3.3 |0.3.3 | |
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|rlang |1.1.2 |1.1.2 | |
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|stringi |1.8.3 |1.8.3 | |
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|vctrs |0.6.5 |0.6.5 | |
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|withr |2.5.2 |2.5.2 | |
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|package |old |new |Δ |
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|:-----------------|:------|:-----------|:--|
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|future.batchtools |0.12.1 |0.12.1-9009 |* |
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|backports |1.5.0 |1.5.0 | |
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|base64url |1.4 |1.4 | |
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|batchtools |0.9.17 |0.9.17 | |
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|brew |1.0-10 |1.0-10 | |
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|checkmate |2.3.2 |2.3.2 | |
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|cli |3.6.5 |3.6.5 | |
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|codetools |0.2-20 |0.2-20 | |
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|crayon |1.5.3 |1.5.3 | |
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|data.table |1.17.4 |1.17.4 | |
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|digest |0.6.37 |0.6.37 | |
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|fs |1.6.6 |1.6.6 | |
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|future |1.58.0 |1.58.0 | |
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|globals |0.18.0 |0.18.0 | |
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|glue |1.8.0 |1.8.0 | |
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|hms |1.1.3 |1.1.3 | |
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|lifecycle |1.0.4 |1.0.4 | |
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|listenv |0.9.1 |0.9.1 | |
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|parallelly |1.45.0 |1.45.0 | |
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|pkgconfig |2.0.3 |2.0.3 | |
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|prettyunits |1.2.0 |1.2.0 | |
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|progress |1.2.3 |1.2.3 | |
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|R6 |2.6.1 |2.6.1 | |
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|rappdirs |0.3.3 |0.3.3 | |
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|rlang |1.1.6 |1.1.6 | |
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|stringi |1.8.7 |1.8.7 | |
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|vctrs |0.6.5 |0.6.5 | |
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|withr |3.0.2 |3.0.2 | |
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# Revdeps
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## All (5)
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## All (6)
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|package |version |error |warning |note |
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|:----------|:-------|:-----|:-------|:----|
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|[batchtools](problems.md#batchtools)|0.9.17 | | |2 |
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|FAMoS |0.3.0 | | | |
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|nncc |1.0.1 | | | |
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|SimDesign |2.13 | | | |
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|[targets](problems.md#targets)|1.4.0 | | |1 |
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|package |version |error |warning |note |
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|:-----------|:-------|:-----|:-------|:----|
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|[batchtools](problems.md#batchtools)|0.9.17 | | |1 |
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|FAMoS |0.3.1 | | | |
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|futureverse |0.1.0 | | | |
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|nncc |2.0.0 | | | |
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|SimDesign |2.19.2 | | | |
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|targets |1.11.3 | | | |
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‎revdep/cran.md‎

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## revdepcheck results
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We checked 5 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
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We checked 6 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
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* We saw 0 new problems
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* We failed to check 0 packages

‎revdep/problems.md‎

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* GitHub: https://github.com/mllg/batchtools
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* Source code: https://github.com/cran/batchtools
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* Date/Publication: 2023-04-20 14:20:06 UTC
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* Number of recursive dependencies: 84
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* Number of recursive dependencies: 81
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Run `revdep_details(, "batchtools")` for more info
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Run `revdepcheck::revdep_details(, "batchtools")` for more info
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</details>
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## In both
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* checking dependencies in R code ... NOTE
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* checking Rd files ... NOTE
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```
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dev1.wynton.ucsf.edu:pid550439: PSM3 can't open nic unit: 0 (err=23)
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dev1.wynton.ucsf.edu:pid550439.R: Unable to create send CQ of size 5080 on mlx5_0: Cannot allocate memory
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dev1.wynton.ucsf.edu:pid550439.R: Unable to initialize verbs NIC /sys/class/infiniband/mlx5_0 (unit 0:0)
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dev1.wynton.ucsf.edu:pid550439: PSM3 can't open nic unit: 0 (err=23)
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dev1.wynton.ucsf.edu:pid550439.R: Unable to create send CQ of size 5080 on mlx5_0: Cannot allocate memory
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dev1.wynton.ucsf.edu:pid550439.R: Unable to initialize verbs NIC /sys/class/infiniband/mlx5_0 (unit 0:0)
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dev1.wynton.ucsf.edu:pid550439: PSM3 can't open nic unit: 0 (err=23)
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dev1.wynton.ucsf.edu:pid550439.R: Unable to create send CQ of size 5080 on mlx5_0: Cannot allocate memory
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dev1.wynton.ucsf.edu:pid550439.R: Unable to initialize verbs NIC /sys/class/infiniband/mlx5_0 (unit 0:0)
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--------------------------------------------------------------------------
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...
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dev1.wynton.ucsf.edu:pid550439.R: Unable to create send CQ of size 5080 on mlx5_0: Cannot allocate memory
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dev1.wynton.ucsf.edu:pid550439.R: Unable to initialize verbs NIC /sys/class/infiniband/mlx5_0 (unit 0:0)
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--------------------------------------------------------------------------
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Open MPI failed an OFI Libfabric library call (fi_endpoint). This is highly
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unusual; your job may behave unpredictably (and/or abort) after this.
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Local host: dev1
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Location: mtl_ofi_component.c:513
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Error: Invalid argument (22)
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--------------------------------------------------------------------------
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```
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* checking for detritus in the temp directory ... NOTE
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```
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Found the following files/directories:
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‘ompi.dev1.34002’
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```
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# targets
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<details>
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* Version: 1.4.0
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* GitHub: https://github.com/ropensci/targets
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* Source code: https://github.com/cran/targets
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* Date/Publication: 2023-12-11 17:00:02 UTC
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* Number of recursive dependencies: 166
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Run `revdep_details(, "targets")` for more info
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</details>
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## In both
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* checking package dependencies ... NOTE
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```
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Package suggested but not available for checking: ‘qs’
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checkRd: (-1) JobCollection.Rd:41: Lost braces
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41 | \item{namespaces}{code{character} with required packages to load via \code{\link[base]{requireNamespace}}.}
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| ^
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checkRd: (-1) addAlgorithm.Rd:31: Lost braces
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31 | Algorithms are functions which get the code{data} part as well as the problem instance (the return value of the
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| ^
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```
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