GHA: tweaks

Author: HenrikBengtsson

.github/workflows/R-CMD-check.yaml

@@ -35,14 +35,16 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      ## Test in other locale (optional)
-      LANGUAGE: ${{ matrix.config.language }}
       ## R CMD check
       _R_CHECK_CRAN_INCOMING_: false
       _R_CHECK_LENGTH_1_CONDITION_: true
       _R_CHECK_LENGTH_1_LOGIC2_: true
       _R_CHECK_MATRIX_DATA_: true
       _R_CHECK_SUGGESTS_ONLY_: true
+      _R_CHECK_THINGS_IN_TEMP_DIR_: true
+      RCMDCHECK_ERROR_ON: note
+      ## Test in other locale (optional)
+      LANGUAGE: ${{ matrix.config.language }}
 
     steps:
       - uses: actions/checkout@v3
@@ -82,7 +84,6 @@ jobs:
         run: |
           rcmdcheck::rcmdcheck(
             args = c("--no-manual", "--as-cran"),
-            error_on = "note",
             check_dir = "check"
           )
         shell: Rscript {0}

.github/workflows/future_tests.yaml

@@ -6,6 +6,8 @@ jobs:
   future_tests:
     if: "! contains(github.event.head_commit.message, '[ci skip]')"    
 
+    timeout-minutes: 30
+
     runs-on: ubuntu-20.04
 
     name: future.plan=${{ matrix.future.plan }}

inst/templates/sge.tmpl

@@ -28,7 +28,7 @@
   ## As-is resource specifications, e.g.
   ## sge_options <- c("-pe smp 2", "-R yes")
   ## plan(batchtools_sge, resources = list(asis = sge_options))
-  if ("asis" %in% names(resouces)) {
+  if ("asis" %in% names(resources)) {
     cat(sprintf("#$ %s\n", resources[["asis"]]))
     resources <- resources[names(resources) != "asis"]
   }