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REVDEP: 506 reverse dependencies (481 from CRAN + 25 from Bioconductor) with R_FUTURE_FUTURE_LOCAL=defunct [ci skip]
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‎revdep/README.md‎

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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |America/Los_Angeles |
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|date |2025-12-04 |
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|date |2025-12-05 |
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|pandoc |3.8.2.1 @ /software/c4/cbi/software/pandoc-3.8.2.1/bin/pandoc |
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|quarto |1.8.26 @ /software/c4/cbi/software/quarto-1.8.26/bin/quarto |
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# Dependencies
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|package |old |new |Δ |
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|:----------|:------|:-----------|:--|
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|future |1.68.0 |1.68.0-9018 |* |
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|future |1.68.0 |1.68.0-9020 |* |
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|codetools |0.2-20 |0.2-20 | |
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|digest |0.6.39 |0.6.39 | |
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|globals |0.18.0 |0.18.0 | |
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|:-----------|:-------|:------|:-------|:----|
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|[modeltuning](problems.md#modeltuning)|0.1.2 |__+2__ | | |
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## All (507)
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## All (506)
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|package |version |error |warning |note |
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|:----------------------------|:----------|:------|:-------|:----|
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|fEGarch |1.0.3 | | | |
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|ferrn |0.3.0 | | | |
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|fiery |1.4.1 | | | |
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|filibustr |0.4.1 | | | |
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|finbif |0.9.11 | | | |
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|fitlandr |0.1.0 | | | |
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|flassomsm |0.1.0 | | | |
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|LWFBrook90R |0.6.3 | | | |
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|maestro |0.7.0 | | | |
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|[MAI](problems.md#mai) |1.16.0 | | |1 |
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|malariaAtlas |1.6.4 | | | |
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|[malariaAtlas](problems.md#malariaatlas)|1.6.4 |1 | | |
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|MAMS |3.0.3 | | | |
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|[mapme.biodiversity](problems.md#mapmebiodiversity)|0.9.5 |1 | | |
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|marginaleffects |0.31.0 | | | |
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|nfl4th |1.0.4 | | | |
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|nflfastR |5.1.0 | | | |
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|nflseedR |2.0.2 | | | |
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|nhdplusTools |1.4.0 | | | |
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|nhdplusTools |1.4.1 | | | |
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|[nixtlar](problems.md#nixtlar)|0.6.2 | | |1 |
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|nncc |2.0.0 | | | |
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|normref |0.0.0.1 | | | |

‎revdep/cran.md‎

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## revdepcheck results
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We checked 507 reverse dependencies (482 from CRAN + 25 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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We checked 506 reverse dependencies (481 from CRAN + 25 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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* We saw 1 new problems
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* We failed to check 1 packages

‎revdep/notes.md‎

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* dar
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* gtfs2emis
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* gtfs2gps
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* mistyR
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* signeR
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* simIDM
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* uci

‎revdep/problems.md‎

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ERROR
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Running the tests in ‘tests/testthat.R’ failed.
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Last 50 lines of output:
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> test-adjust_frm.R: [1;30m2025-12-04 21:00:00.42[0m Estimating performance of adjusted model in CV
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> test-adjust_frm.R: [1;30m2025-12-04 21:00:00.44[0m Fitting adjustment model on full new data set
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> test-adjust_frm.R: [1;30m2025-12-04 21:00:00.45[0m Returning adjusted frm object
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> test-adjust_frm.R: [1;30m2025-12-04 21:00:00.45[0m Starting model Adjustment
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> test-adjust_frm.R: [1;30m2025-12-04 21:00:00.45[0m dim(original_data): 442 x 126
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> test-adjust_frm.R: [1;30m2025-12-04 21:00:00.45[0m dim(new_data): 25 x 3
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> test-adjust_frm.R: [1;30m2025-12-05 09:45:05.02[0m Estimating performance of adjusted model in CV
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> test-adjust_frm.R: [1;30m2025-12-05 09:45:05.09[0m Fitting adjustment model on full new data set
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> test-adjust_frm.R: [1;30m2025-12-05 09:45:05.09[0m Returning adjusted frm object
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> test-adjust_frm.R: [1;30m2025-12-05 09:45:05.09[0m Starting model Adjustment
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> test-adjust_frm.R: [1;30m2025-12-05 09:45:05.09[0m dim(original_data): 442 x 126
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> test-adjust_frm.R: [1;30m2025-12-05 09:45:05.09[0m dim(new_data): 25 x 3
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...
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Backtrace:
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▆
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is not mentioned in the DESCRIPTION file.
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```
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# malariaAtlas
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<details>
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* Version: 1.6.4
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* GitHub: https://github.com/malaria-atlas-project/malariaAtlas
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* Source code: https://github.com/cran/malariaAtlas
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* Date/Publication: 2025-06-11 11:00:06 UTC
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* Number of recursive dependencies: 118
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Run `revdepcheck::revdep_details(, "malariaAtlas")` for more info
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</details>
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## In both
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* checking re-building of vignette outputs ... ERROR
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```
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Error(s) in re-building vignettes:
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...
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--- re-building ‘overview.Rmd’ using rmarkdown
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```
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# mapme.biodiversity
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<details>
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* checking dependencies in R code ... NOTE
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```
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c4-n43:pid1272045: PSM3 can't open nic unit: 0 (err=23)
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c4-n43:pid1272045.R: Unable to create UDP socket for ens13f0np0: Address family not supported by protocol
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c4-n43:pid1272045.R: Unable to initialize sockets NIC /sys/class/net/ens13f0np0 (unit 0:0)
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c4-n43:pid1272045: PSM3 can't open nic unit: 0 (err=23)
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c4-n43:pid1272045.R: Unable to create UDP socket for ens13f0np0: Address family not supported by protocol
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c4-n43:pid1272045.R: Unable to initialize sockets NIC /sys/class/net/ens13f0np0 (unit 0:0)
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c4-n43:pid1272045: PSM3 can't open nic unit: 1 (err=23)
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c4-n43:pid1272045.R: Unable to create UDP socket for ens13f1np1: Address family not supported by protocol
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c4-n43:pid1272045.R: Unable to initialize sockets NIC /sys/class/net/ens13f1np1 (unit 1:0)
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c4-n43:pid1272045: PSM3 can't open nic unit: 0 (err=23)
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c4-n43:pid2902775: PSM3 can't open nic unit: 0 (err=23)
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c4-n43:pid2902775.R: Unable to create UDP socket for ens13f0np0: Address family not supported by protocol
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c4-n43:pid2902775.R: Unable to initialize sockets NIC /sys/class/net/ens13f0np0 (unit 0:0)
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c4-n43:pid2902775: PSM3 can't open nic unit: 0 (err=23)
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c4-n43:pid2902775.R: Unable to create UDP socket for ens13f0np0: Address family not supported by protocol
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c4-n43:pid2902775.R: Unable to initialize sockets NIC /sys/class/net/ens13f0np0 (unit 0:0)
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c4-n43:pid2902775: PSM3 can't open nic unit: 1 (err=23)
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c4-n43:pid2902775.R: Unable to create UDP socket for ens13f1np1: Address family not supported by protocol
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c4-n43:pid2902775.R: Unable to initialize sockets NIC /sys/class/net/ens13f1np1 (unit 1:0)
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c4-n43:pid2902775: PSM3 can't open nic unit: 0 (err=23)
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...
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c4-n43:pid1272045.R: Unable to create UDP socket for ens13f1np1: Address family not supported by protocol
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c4-n43:pid1272045.R: Unable to initialize sockets NIC /sys/class/net/ens13f1np1 (unit 1:0)
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c4-n43:pid2902775.R: Unable to create UDP socket for ens13f1np1: Address family not supported by protocol
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c4-n43:pid2902775.R: Unable to initialize sockets NIC /sys/class/net/ens13f1np1 (unit 1:0)
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--------------------------------------------------------------------------
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Open MPI failed an OFI Libfabric library call (fi_endpoint). This is highly
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unusual; your job may behave unpredictably (and/or abort) after this.
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Loading required package: rpart
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Loading required package: yardstick
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Warning: Caught FutureLaunchError. Canceling all iterations ...
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Error: Caught an unexpected error of class FutureLaunchError when trying to launch future (‘future_lapply-1’) on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on c4-n43 (pid 3283309) at 2025-12-04T21:07:59. Using package 'future' v1.68.0.9018. Possible other reasons: Failed to attach one or more packages: there is no package called ‘Matrix’ [future <unnamed>; on e507602b2ed095a799ee713a6dc0a579@c4-dev4<3283309>] [future ‘future_lapply-1’ (e507602b2ed095a799ee713a6dc0a579-1); on e507602b2ed095a799ee713a6dc0a579@c4-dev4<3283309>]
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Error: Caught an unexpected error of class FutureLaunchError when trying to launch future (‘future_lapply-1’) on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on c4-n43 (pid 733107) at 2025-12-05T09:52:46. Using package 'future' v1.68.0.9020. Possible other reasons: Failed to attach one or more packages: there is no package called ‘Matrix’ [future <unnamed>; on bfec534416eb9f05756cc43d4abd3af5@c4-dev4<733107>] [future ‘future_lapply-1’ (bfec534416eb9f05756cc43d4abd3af5-1); on bfec534416eb9f05756cc43d4abd3af5@c4-dev4<733107>]
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Execution halted
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```
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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<error/rlang_error>
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Error:
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! Caught an unexpected error of class FutureLaunchError when trying to launch future ('future_lapply-1') on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on c4-n43 (pid 3286946) at 2025-12-04T21:08:02. Using package 'future' v1.68.0.9018. Possible other reasons: Failed to attach one or more packages: there is no package called 'Matrix' [future <unnamed>; on 792d055910925f2f94f082b1d582b9da@c4-dev4<3286946>] [future 'future_lapply-1' (792d055910925f2f94f082b1d582b9da-1); on 792d055910925f2f94f082b1d582b9da@c4-dev4<3286946>]
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! Caught an unexpected error of class FutureLaunchError when trying to launch future ('future_lapply-1') on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on c4-n43 (pid 739585) at 2025-12-05T09:52:49. Using package 'future' v1.68.0.9020. Possible other reasons: Failed to attach one or more packages: there is no package called 'Matrix' [future <unnamed>; on 028d822f2c9cd32d362379a0ab230aea@c4-dev4<739585>] [future 'future_lapply-1' (028d822f2c9cd32d362379a0ab230aea-1); on 028d822f2c9cd32d362379a0ab230aea@c4-dev4<739585>]
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---
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Backtrace:
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...
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Error: processing vignette 'scaling-with-aws.Rmd' failed with diagnostics:
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Caught an unexpected error of class FutureLaunchError when trying to launch future ('future_lapply-1') on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on c4-n43 (pid 3293138) at 2025-12-04T21:08:07. Using package 'future' v1.68.0.9018. Possible other reasons: Failed to attach one or more packages: there is no package called 'Matrix' [future <unnamed>; on f58bdf077e6fb02089804439f40f314d@c4-dev4<3293138>] [future ‘future_lapply-1’ (f58bdf077e6fb02089804439f40f314d-1); on f58bdf077e6fb02089804439f40f314d@c4-dev4<3293138>]
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Caught an unexpected error of class FutureLaunchError when trying to launch future ('future_lapply-1') on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on c4-n43 (pid 757226) at 2025-12-05T09:52:55. Using package 'future' v1.68.0.9020. Possible other reasons: Failed to attach one or more packages: there is no package called 'Matrix' [future <unnamed>; on 621a1ba2a825156ee2b2b53fa9fbcb05@c4-dev4<757226>] [future ‘future_lapply-1’ (621a1ba2a825156ee2b2b53fa9fbcb05-1); on 621a1ba2a825156ee2b2b53fa9fbcb05@c4-dev4<757226>]
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--- failed re-building ‘scaling-with-aws.Rmd’
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SUMMARY: processing the following files failed:
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[shinyOAuth] - HTTP request failed
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x Failed to fetch OIDC discovery document
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x Status 503: Service Unavailable.
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i URL: http://127.0.0.1:33463/.well-known/openid-configuration
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i Trace ID: d50M25AiRKc7
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i URL: http://127.0.0.1:45231/.well-known/openid-configuration
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i Trace ID: ryutncq4jwVw
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[ FAIL 23 | WARN 0 | SKIP 12 | PASS 671 ]
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Error:
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test_learner_stratify.R....... 0 tests
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test_learner_stratify.R....... 3 tests OK
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test_learner_stratify.R....... 3 tests OK
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test_learner_stratify.R....... 5 tests [0;32mOK[0m [0;36m31ms[0m
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test_learner_stratify.R....... 5 tests [0;32mOK[0m [0;36m34ms[0m
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...
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In addition: Warning messages:
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1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :

‎revdep/revdepcheck.Renviron‎

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## Allow for at least two workers
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R_PARALLELLY_AVAILABLECORES_FALLBACK=2
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## Allow for at most 32 cores
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## Allow for at most 5 cores
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## Needed for parallelly (< 1.46.0), which will return
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## detectCores() when check vignettes
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R_PARALLELLY_AVAILABLECORES_MAX=32
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R_PARALLELLY_AVAILABLECORES_MAX=5
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## Allow for at most 8 threads
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OMP_NUM_THREADS=8

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