Merge pull request #179 from thepineapplepirate/master

need this in order to vertically concatenate collections of these outputs

Author: bgruening

tools/buildtools/protein_structure_rebuilders/BioPDB/BioPDB_align_and_rmsd.py

@@ -95,7 +95,7 @@ def __main__():
 
     # Save RMSD into an output file:
     with open(args.rmsd, 'w') as rmsd_out:
-        rmsd_out.write(str(super_imposer.rms))
+        rmsd_out.write("{}\n".format(super_imposer.rms))
 
     # Save aligned coordinates of the model:
     io = Bio.PDB.PDBIO()

tools/buildtools/protein_structure_rebuilders/BioPDB/BioPDB_align_and_rmsd.xml

@@ -2,7 +2,7 @@
     <description>using Biopython</description>
     <macros>
         <token name="@TOOL_VERSION@">1.79</token>
-        <token name="@GALAXY_VERSION@">0</token>
+        <token name="@GALAXY_VERSION@">1</token>
     </macros>
     <requirements>
         <requirement type="package" version="1.79">biopython</requirement>