From 5bc1cf060dae8455198cbec90953d988d7d8cd92 Mon Sep 17 00:00:00 2001 From: Jennifer Hillman-Jackson Date: Wed, 28 Feb 2024 09:11:26 -0800 Subject: [PATCH 1/2] Update genomes.yml Plasmodium vivax (malaria parasite P. vivax) (GCA_900093555.2) --- genomes.yml | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/genomes.yml b/genomes.yml index 96d0c9c..517b56d 100644 --- a/genomes.yml +++ b/genomes.yml @@ -59,6 +59,26 @@ genomes: #- data_manager_kallisto_index_builder skiplist: - bfast + - dbkey: GCA_900093555.2 + description: “Plasmodium vivax (malaria parasite P. vivax)” + id: GCA_900093555.2 + source: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/093/555/GCA_900093555.2_GCA_900093555/GCA_900093555.2_GCA_900093555_genomic.fna.gz + doi: + version: + checksum: bb25e2146e4450dc5b1225db75888537 + blob: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_900093555.2/ + indexers: + - data_manager_bowtie2_index_builder + - data_manager_bwa_mem_index_builder + - data_manager_twobit_builder + - data_manager_picard_index_builder + - data_manager_sam_fasta_index_builder + - data_manager_hisat2_index_builder + - data_manager_star_index_builder + #- data_manager_bowtie_index_builder + #- data_manager_kallisto_index_builder + skiplist: + - bfast - dbkey: Ecoli-O157-H7-Sakai description: "Escherichia coli O157-H7 Sakai" id: Ecoli-O157-H7-Sakai From 66476bf4b9b961de1e4a13a5d7c1bda08bfba0a5 Mon Sep 17 00:00:00 2001 From: Jennifer Hillman-Jackson Date: Wed, 28 Feb 2024 10:22:50 -0800 Subject: [PATCH 2/2] Modify desc GCA_900093555.2 Plasmodium vivax (malaria parasite P. vivax/ASM241v2) --- genomes.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/genomes.yml b/genomes.yml index 517b56d..bf72637 100644 --- a/genomes.yml +++ b/genomes.yml @@ -60,7 +60,7 @@ genomes: skiplist: - bfast - dbkey: GCA_900093555.2 - description: “Plasmodium vivax (malaria parasite P. vivax)” + description: “Plasmodium vivax (malaria parasite P. vivax/ASM241v2)” id: GCA_900093555.2 source: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/093/555/GCA_900093555.2_GCA_900093555/GCA_900093555.2_GCA_900093555_genomic.fna.gz doi: