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workflows/epigenetics/chipseq-pe/chipseq-pe.ga

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{
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"a_galaxy_workflow": "true",
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"annotation": "Complete ChIP-seq analysis for paired-end sequencing data. It goes from fastqs to peaks and coverage.",
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"annotation": "Complete ChIP-seq analysis for paired-end sequencing data. Processes raw FASTQ files through adapter removal (fastp), alignment to reference genome (Bowtie2), and stringent quality filtering (MAPQ greater than 30, concordant pairs only). Peak calling with MACS2 optimized for paired-end reads identifies protein-DNA binding sites. Generates alignment files, coverage, peak calls, and quality metrics for downstream analysis.",
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"comments": [],
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"creator": [
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{
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"uuid": "923716d4-2cd0-4809-b904-0f34290e9db8",
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"version": 3,
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"release": "1.0"
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}
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}

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