Merge pull request #652 from planemo-autoupdate/workflows/epigenetics/consensus-peaks

Updating workflows/epigenetics/consensus-peaks from 1.2 to 1.3

Author: Lucille Delisle

workflows/epigenetics/consensus-peaks/CHANGELOG.md

@@ -1,5 +1,10 @@
 # Changelog
 
+## [1.3] 2025-01-27
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0`
+
 ## [1.2] 2024-09-24
 
 ### Automatic update

workflows/epigenetics/consensus-peaks/consensus-peaks-atac-cutandrun.ga

@@ -81,7 +81,7 @@
     ],
     "format-version": "0.1",
     "license": "MIT",
-    "release": "1.2",
+    "release": "1.3",
     "name": "Get Confident Peaks From ATAC or CUTandRUN replicates",
     "steps": {
         "0": {
@@ -1226,7 +1226,7 @@
         },
         "24": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
             "errors": null,
             "id": 24,
             "input_connections": {
@@ -1263,15 +1263,15 @@
                     "output_name": "stats"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "f7e2f1eb3a16",
+                "changeset_revision": "a7e081ceb76a",
                 "name": "multiqc",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"macs2\", \"__current_case__\": 16, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"software_cond\": {\"software\": \"macs2\", \"__current_case__\": 16, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "1.24.1+galaxy0",
+            "tool_version": "1.27+galaxy0",
             "type": "tool",
             "uuid": "f7d74248-16e3-4020-8156-caae0e7682ef",
             "when": null,

workflows/epigenetics/consensus-peaks/consensus-peaks-chip-pe.ga

@@ -81,7 +81,7 @@
     ],
     "format-version": "0.1",
     "license": "MIT",
-    "release": "1.2",
+    "release": "1.3",
     "name": "Get Confident Peaks From ChIP_PE replicates",
     "steps": {
         "0": {
@@ -1136,7 +1136,7 @@
         },
         "22": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
             "errors": null,
             "id": 22,
             "input_connections": {
@@ -1173,15 +1173,15 @@
                     "output_name": "stats"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "f7e2f1eb3a16",
+                "changeset_revision": "a7e081ceb76a",
                 "name": "multiqc",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"macs2\", \"__current_case__\": 16, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"software_cond\": {\"software\": \"macs2\", \"__current_case__\": 16, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "1.24.1+galaxy0",
+            "tool_version": "1.27+galaxy0",
             "type": "tool",
             "uuid": "f7d74248-16e3-4020-8156-caae0e7682ef",
             "when": null,

workflows/epigenetics/consensus-peaks/consensus-peaks-chip-sr.ga

@@ -81,7 +81,7 @@
     ],
     "format-version": "0.1",
     "license": "MIT",
-    "release": "1.2",
+    "release": "1.3",
     "name": "Get Confident Peaks From ChIP_SR replicates",
     "steps": {
         "0": {
@@ -1136,7 +1136,7 @@
         },
         "22": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
             "errors": null,
             "id": 22,
             "input_connections": {
@@ -1173,15 +1173,15 @@
                     "output_name": "stats"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "f7e2f1eb3a16",
+                "changeset_revision": "a7e081ceb76a",
                 "name": "multiqc",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"macs2\", \"__current_case__\": 16, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"software_cond\": {\"software\": \"macs2\", \"__current_case__\": 16, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "1.24.1+galaxy0",
+            "tool_version": "1.27+galaxy0",
             "type": "tool",
             "uuid": "f7d74248-16e3-4020-8156-caae0e7682ef",
             "when": null,