Merge pull request #1131 from planemo-autoupdate/workflows/epigenetics/cutandrun

Updating workflows/epigenetics/cutandrun from 0.16 to 0.17

Author: mvdbeek

workflows/epigenetics/cutandrun/CHANGELOG.md

@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.17] - 2026-03-09
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.5+galaxy0`
+
 ## [0.16] - 2026-03-02
 
 ### Automatic update

workflows/epigenetics/cutandrun/cutandrun.ga

@@ -252,7 +252,7 @@
         },
         "7": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.4+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.5+galaxy0",
             "errors": null,
             "id": 7,
             "input_connections": {
@@ -312,16 +312,16 @@
                     "output_name": "output"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.4+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.5+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "f76cbb84d67f",
+                "changeset_revision": "a470b376503d",
                 "name": "bowtie2",
                 "owner": "devteam",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"__job_resource\": {\"__current_case__\": 0, \"__job_resource__select\": \"no\"}, \"analysis_type\": {\"analysis_type_selector\": \"simple\", \"__current_case__\": 0, \"presets\": \"--very-sensitive\"}, \"library\": {\"type\": \"paired_collection\", \"__current_case__\": 1, \"input_1\": {\"__class__\": \"ConnectedValue\"}, \"unaligned_file\": false, \"aligned_file\": false, \"paired_options\": {\"paired_options_selector\": \"yes\", \"__current_case__\": 0, \"I\": \"0\", \"X\": \"1000\", \"fr_rf_ff\": \"--fr\", \"no_mixed\": false, \"no_discordant\": false, \"dovetail\": true, \"no_contain\": false, \"no_overlap\": false}}, \"reference_genome\": {\"source\": \"indexed\", \"__current_case__\": 0, \"index\": {\"__class__\": \"ConnectedValue\"}}, \"rg\": {\"rg_selector\": \"do_not_set\", \"__current_case__\": 3}, \"sam_options\": {\"sam_options_selector\": \"no\", \"__current_case__\": 1}, \"save_mapping_stats\": true, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_uuid": null,
-            "tool_version": "2.5.4+galaxy0",
+            "tool_version": "2.5.5+galaxy0",
             "type": "tool",
             "uuid": "407d46cc-d908-44eb-a4dd-125537498b17",
             "when": null,
@@ -857,7 +857,7 @@
     "tags": [
         "CUTnRUN"
     ],
-    "uuid": "e171ebbb-42f3-404b-822b-a1c125204774",
+    "uuid": "fbf8707b-e9f1-4289-acd8-720e50562432",
     "version": 1,
-    "release": "0.16"
+    "release": "0.17"
 }