update mito annotation step

Author: pavanvidem

workflows/scRNAseq/scanpy-clustering/Preprocessing-and-Clustering-of-single-cell-RNA-seq-data-with-Scanpy.ga

@@ -972,7 +972,12 @@
                     "output_name": "output"
                 }
             },
-            "inputs": [],
+            "inputs": [
+                {
+                    "description": "runtime parameter for tool Manipulate AnnData",
+                    "name": "input"
+                }
+            ],
             "label": "Flag Mitochondrial genes",
             "name": "Manipulate AnnData",
             "outputs": [
@@ -1001,7 +1006,7 @@
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"input\": {\"__class__\": \"ConnectedValue\"}, \"manipulate\": {\"function\": \"flag_genes\", \"__current_case__\": 5, \"gene_flags\": [{\"__index__\": 0, \"startswith\": {\"__class__\": \"ConnectedValue\"}, \"col_in\": \"\", \"col_out\": null}]}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"input\": {\"__class__\": \"RuntimeValue\"}, \"manipulate\": {\"function\": \"flag_genes\", \"__current_case__\": 5, \"gene_flags\": [{\"__index__\": 0, \"startswith\": {\"__class__\": \"ConnectedValue\"}, \"col_in\": \"\", \"col_out\": \"mito\"}]}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "0.10.9+galaxy1",
             "type": "tool",
             "uuid": "3e2f944c-8141-48f0-930b-9c21883d27d1",