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Merge pull request #1413 from davebx/fastx_migrate
Migrate fastx toolkit from tools-devteam, condafy.
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‎.travis.yml‎

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@@ -29,7 +29,7 @@ jobs:
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script:
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- set -e
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- cd "$TRAVIS_BUILD_DIR" && flake8 --exclude=.git,./deprecated/ .
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- while read -r DIR; do planemo shed_lint --tools --ensure_metadata --report_level warn --fail_level error --recursive "$DIR"; done < changed_repositories.list
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- while read -r DIR; do planemo shed_lint --tools --ensure_metadata --urls --report_level warn --fail_level error --recursive "$DIR"; done < changed_repositories.list
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- stage: test
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env: CHUNK=0

‎tool_collections/fastx_toolkit/fasta_clipping_histogram/.shed.yml‎

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categories:
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- Fasta Manipulation
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- Graphics
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- Statistics
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description: Length Distribution chart
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long_description: |
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This tool creates a histogram image of sequence lengths distribution
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in a given fasta dataset file.
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homepage_url: http://hannonlab.cshl.edu/fastx_toolkit/
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name: fasta_clipping_histogram
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owner: devteam
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remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fasta_clipping_histogram
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type: unrestricted

‎tool_collections/fastx_toolkit/fasta_clipping_histogram/fasta_clipping_histogram.xml‎

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<tool id="cshl_fasta_clipping_histogram" name="Length Distribution" version="1.0.1">
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<description>chart</description>
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<macros>
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<import>macros.xml</import>
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</macros>
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<expand macro="requirements">
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<requirement type="package" version="1.49">perl-gdgraph</requirement>
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</expand>
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<command detect_errors="exit_code"><![CDATA[
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fasta_clipping_histogram.pl
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'$input'
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'$outfile'
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]]></command>
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<inputs>
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<expand macro="fasta_input" />
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</inputs>
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<outputs>
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<data name="outfile" format="png" metadata_source="input" />
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</outputs>
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<tests>
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<test>
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<param name="input" value="fasta_clipping_histogram-in1.fa" />
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<output name="outfile" file="fasta_clipping_histogram-out1.png" compare="sim_size" delta="512" />
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</test>
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<test>
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<param name="input" value="fasta_clipping_histogram-in2.fa" />
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<output name="outfile" file="fasta_clipping_histogram-out2.png" compare="sim_size" delta="512" />
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</test>
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</tests>
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<help><![CDATA[
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**What it does**
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This tool creates a histogram image of sequence lengths distribution in a given fasta dataset file.
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**TIP:** Use this tool after clipping your library (with **FASTX Clipper tool**), to visualize the clipping results.
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-----
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**Output Examples**
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In the following library, most sequences are 24-mers to 27-mers.
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This could indicate an abundance of endo-siRNAs (depending of course of what you've tried to sequence in the first place).
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.. image:: ${static_path}/fastx_icons/fasta_clipping_histogram_1.png
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In the following library, most sequences are 19,22 or 23-mers.
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This could indicate an abundance of miRNAs (depending of course of what you've tried to sequence in the first place).
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.. image:: ${static_path}/fastx_icons/fasta_clipping_histogram_2.png
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-----
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**Input Formats**
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This tool accepts short-reads FASTA files. The reads don't have to be short, but they do have to be on a single line, like so::
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>sequence1
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AGTAGTAGGTGATGTAGAGAGAGAGAGAGTAG
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>sequence2
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GTGTGTGTGGGAAGTTGACACAGTA
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>sequence3
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CCTTGAGATTAACGCTAATCAAGTAAAC
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If the sequences span over multiple lines::
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>sequence1
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CAGCATCTACATAATATGATCGCTATTAAACTTAAATCTCCTTGACGGAG
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TCTTCGGTCATAACACAAACCCAGACCTACGTATATGACAAAGCTAATAG
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aactggtctttacctTTAAGTTG
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Use the **FASTA Width Formatter** tool to re-format the FASTA into a single-lined sequences::
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>sequence1
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CAGCATCTACATAATATGATCGCTATTAAACTTAAATCTCCTTGACGGAGTCTTCGGTCATAACACAAACCCAGACCTACGTATATGACAAAGCTAATAGaactggtctttacctTTAAGTTG
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-----
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**Multiplicity counts (a.k.a reads-count)**
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If the sequence identifier (the text after the '>') contains a dash and a number, it is treated as a multiplicity count value (i.e. how many times that individual sequence repeated in the original FASTA file, before collapsing).
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Example 1 - The following FASTA file *does not* have multiplicity counts::
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>seq1
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GGATCC
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>seq2
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GGTCATGGGTTTAAA
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>seq3
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GGGATATATCCCCACACACACACAC
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Each sequence is counts as one, to produce the following chart:
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.. image:: ${static_path}/fastx_icons/fasta_clipping_histogram_3.png
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Example 2 - The following FASTA file have multiplicity counts::
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>seq1-2
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GGATCC
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>seq2-10
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GGTCATGGGTTTAAA
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>seq3-3
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GGGATATATCCCCACACACACACAC
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The first sequence counts as 2, the second as 10, the third as 3, to produce the following chart:
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.. image:: ${static_path}/fastx_icons/fasta_clipping_histogram_4.png
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Use the **FASTA Collapser** tool to create FASTA files with multiplicity counts.
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------
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This tool is based on `FASTX-toolkit`__ by Assaf Gordon.
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.. __: http://hannonlab.cshl.edu/fastx_toolkit/
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]]></help>
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<expand macro="citations" />
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</tool>

‎tool_collections/fastx_toolkit/fasta_clipping_histogram/macros.xml‎

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../macros.xml

‎tool_collections/fastx_toolkit/fasta_clipping_histogram/test-data/fasta_clipping_histogram-in1.fa‎

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>Scaffold3648
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AGGAATGATGACTACAATGATCAACTTAACCTATCTATTTAATTTAGTTCCCTAATGTCAGGGACCTACCTGTTTTTGTTATGTTTGGGTTTTGTTGTTGTTGTTTTTTTAATCTGAAGGTATTGTGCATTATATGACCTGTAATACACAGTATAACTTTTCAAATACTTTTGTTTTACAACTTTTCTCTCTGGACTTATATTAAAGTCAATTTTAATGAACATGTAGTAAAAACTAATACATGTACATCTACAGTTTATTTATTTTTTTCTTCTTCTTTTTGTATTTCTTGTGTTACATTATTTCACTTCACGTTCATGTTACCAACCTTGCCCCCTTGCTTTCCATGCAAAAAAAGAAAAAAAAGAAGCAATACTTACACTTACCCTTGAGATATCTTGATCTGAATGCTTTAACATTCTATATGTACAATAAATTTTTGTATCTATAGCCTATTATTATATATGTTGCTATGTCAGGCACATTGACAACATTCTCAGAAGGTTAGAAGATGGTATTGTTCTGAAATGCCTGGAATGCCTTGTGAACTAAGATGATTACTCATGTCATTAAAGTCCCCTAACCCAGGTATTTCCTCCTTCCCATGACGAAAACAGTCCATTTAAACTTCACCCCACTTTGGACCCGAAAGTGGGGTGCATTTTGGTGGTAAGCTCACCACAGAGCAAGAGAGAGTTAGAGTCCCTAATCTGCAGTGTAAACAAACTTTGCCAGGACATCACCAGCCCAACCTTGATAAGTACTGCTTGGAACTCCTCCATGATGTTCTAGTCTTATTCGCAGTCTCATATAGGTTCGGATTTTGTCCATTCTCATAGCTACCAGTATACATGGGAGATGCCAGTTTCATCTTCCTTGCTTCACTTTATAAGCATAGTTATATCANGAACTTCCTGGTTATAATTATGTTCCTTTCAAGTTTCATCATAATTGTCTAGTTCGATATAGTACATGGACACAATTAAATATGATATTGTCT
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>Scaffold9299
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CAGCATCTACATAATATGATCGCTATTAAACTTAAATCTCCTTGACGGAGTCTTCGGTCATAACACAAACCCAGACCTACGTATATGACAAAGCTAATAGGAAAAGCATCCTTGTTTGTTTCACTATGCTTTTTAATGGTTGACGTTAAaggtaaagaccagtattggaaacgccccaatttcaaaaaatgaaatggaagctctcattaccaatcatgtgaaagaatatgttttgactaatacatgatgataaaaaaattgccgggaaaccgcctactaattcatatatttagtaaatttgtttctctcatggtctgtgagagatatagggtagtcccatatacatctttctgtgtatagtgcttgtaactttacgaagaatgggccaaatttcttatcattttgatgattccagaaccttgcagatgcgagatggtagatgatcaaccttttctgatcgattccataacgtttctttcacaatgcaatcgcatgaccataactggtctttacctTTAAGTTGTAGGTCTTAATTGATAACACTATATAGTTTTTTTCTTTTTACTGTTTTTATTAATGACCTCTGTAATTTGCCCTATTGTGAAAATACTAAAATATGTTTATACGCCGATGATGCGGCAATATTTTGCCAAGGCAAAGAAATTGCCCTTGTTGAGAAAACTCTTAAATGTGAGTTTAAAAAAATAGTTGATCACATTGAAAAAGATGACTTAATGTTGAATATCAAGAAGTGTAAGATCATGTTATTTGGGACAAGAAAACGAATCAAAAATCAAAGTGTACGCTTGATTTACAGAGATAATGTTATCGAAGTTGTAAATGAATTTAAATATCTTGGTGTATTATTTGATAATTATTTAAAGTGGGATATACATATATCGAAAACTGCCTCCAAAATATCTAGAACCATATCATGTATAAAACGAATTAAATATTATTTGCCGAAAAGAATTTTAAAATTGTTATATGATAGTTTGATATTGTCACATATTGACTACGGTATTGTTTTGTGGGGATGTTCAGCAAAGTGTCATTTGGAAAAGTTACAAAAGTTACAAAATCGTTATGCCCGTTTAATACTAAACGTAGATATTTTGACACCTCGTATTATATTATTATCCTCTCTAAGATGGCAATCAGTTGTTCAGAGAGTGCAATACCAA
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>Scaffold9309
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GAAGGAAGAAGAGGAAAATAATGATGAATTTGTAGAATTTCTATAACGTATGAAAACATAAACAACATGAAAAAGTATGAACCGACAGAAGAATGAAAATTTCAATCATATAACATGTCATTCACTTCTCTTCTCTGACTGTCAAGTATTAGGTATTCCTTTTTATTTCCTCTTAAAATGATCATAGTTTCCTATTTCTTTTACACCATTGGGAAGGGAATTCCAATGTTTTATGGCATTGTAATAAAACGAATTTCCAATACTACCTACTCTTTCTGGTAAGTTAAAGTTGAATCGGCTATTTCTTGTATTATAATCATGTACGTCAGTAACAAGATCGAAGTTGGATCGAATATAATGATTCGACCTAGTATGATATATTTTATGCACGTGATGCAATACGAGTTGTTTTGATCTTTGGTCGACTTCAAGAAAACCAGCTTTAGAAAGTTCGCTGTAGCCAACATGAGTTCTTGCCTTGGACTAGAACAGTTGATAAATCTCACCATTTTGTTCTTTAAGATGGGTAGAAGAATCCCTGCAATCTAAATGGTCAATTACTGTGAAGTTATTTTTACTGGATGCACCCAATAtttttttgataatttttttttctttgataatttttttctttttctttaataaattttttggataatttttttttggataaatagttcttttttgataattctaataatttttttatttattttttttttttctataattttttttaaaaaatttattaatttttaattaaaaaaaaaataaGAGTTAACAGATTAAGGGAAACTGACAATTCAAAAAAAAAAAAAA
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>Scaffold9310
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GCGGGGGCTGGGGAGGAAGGGGTGGCGTTATTTCACTTCCGATCTAATACGCTTTCTTAAGACACTGAAATATCAGTAGGTATTGGTATAGAGAATTACTTTTTATTTTTAATTAAAACATTATCGAAATGAAGATACAGAGAAAAACGATGAGATGTAAGAAGTGCGCGTATTTAtgtgtgtgggtgcgtgtgtgtgtgtgtgtgtgtgttgtgtgcgtgcgtgtgtgtggtggtgtgtACTAATTTTGATGTGTGTTGTGGCACAATTGCAATCATCAGTATCTTCATGAAAATGATAACCAGAAGCACAAAAAGGAGGgtgcgtgtgtgtgtgtgtgtgtttagtgtgcgtgcgtgtgagggtgtttaagtgtgtatgtCGGAAATGTGGCACAATTGCAATCATCTGTATCTTCATGAAAATGATAACCAGAAGAACAAAAAAAAAAAACATTGAGAGAACATGTTTTTTTGATGGAAGACAAGAAGTTCTCGTAACGTAGGATCTCCGAGACATGATGGGGTCAACTTAAAAAGAGAGCAGTGAGAGGCATTTATATCGAAGGTCAGGGAAAGGCAAACAAAGAAAGAAAAAAAAAAGGCTCACAGGAGAACGAAAACACGGGCCAAAATAATAAACAGGAGCAAGTGAACGGGCAGTTTGGTAGCTACTTCATTTACCGGCTTTTAAaggtactatgtcccatttgcaggtcaaaaaaaatgaaaaagttaaattccaactgcatttgaaagataatactaatttacaacttccctaaaaaaggtggggcttgaaaatgtcttcaagtgcggaaaataacgactattagttgtcaaatcgactttagggCTATAGAGCCCAAAAGTAATAGTCTTGA
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>Scaffold11911
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TTCTTGGCACCCCCCCCCCCCCCACACTCCTGCACTGAAGAACTACTCAAGTTTAAACTTTGCATTGCTTTTCTTTCTTTTTCAGTATTTTTTGCTTGGTACATGTTTCTCTTAATATCTGTCGTATAGatttttaatatttttatttatatCTACGTCAATCTGGCTGttctttttcttgtcttctttttttttctctctcttttttttcctcgtattttGTATTGATCCTTACCCTAGTTTTTGAACTTGAACAGCAATTTGCAGCACTCAAATTTCTTTAAAATTACCTTCTCTTATTTGtctctgttcccctctccccccctctctctctctctctctctctctctctctctctctttcATCTCCCATATCATAATTTGAAGTACCATCTATGGTGTTTTCAGATTGATCTTTCTTGCTTTCCCCACCCTCCCCCTTTATGCAGTTAATTTTCAGTCTATTTGTGTTTTCTGTGGTTGATTCTAATCATATTCTAACTCTTATTTTACATTTTACTTCACTAACAACTGGTTTATTATATTTGTTACTAATTTTGAATTAAACTATTTACCATTCTGAACGAACTGAAAGATTAAAGATCAAACTATCTATGAATAGAATGGTATTTCTTCAATTTATTCAAATTTCTCTCTCTTTAACCCCCTTTTTCTGCTTGCATTTTTATCCCTTTGCCGTGGACTTCACTGGATATTTTGCTTTGATGCCAATCCAACAATTTTGCATATATTA

‎tool_collections/fastx_toolkit/fasta_clipping_histogram/test-data/fasta_clipping_histogram-in2.fa‎

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>Scaffold3648
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AGGAATGATGACTACAATGATCAACTTAACCTATCTATTTAATTTAGTTCCCTAATGTCA
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GGGACCTACCTGTTTTTGTTATGTTTGGGTTTTGTTGTTGTTGTTTTTTTAATCTGAAGG
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TATTGTGCATTATATGACCTGTAATACACAGTATAACTTTTCAAATACTTTTGTTTTACA
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ACTTTTCTCTCTGGACTTATATTAAAGTCAATTTTAATGAACATGTAGTAAAAACTAATA
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CATGTACATCTACAGTTTATTTATTTTTTTCTTCTTCTTTTTGTATTTCTTGTGTTACAT
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TATTTCACTTCACGTTCATGTTACCAACCTTGCCCCCTTGCTTTCCATGCAAAAAAAGAA
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AAAAAAGAAGCAATACTTACACTTACCCTTGAGATATCTTGATCTGAATGCTTTAACATT
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CTATATGTACAATAAATTTTTGTATCTATAGCCTATTATTATATATGTTGCTATGTCAGG
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CACATTGACAACATTCTCAGAAGGTTAGAAGATGGTATTGTTCTGAAATGCCTGGAATGC
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CTTGTGAACTAAGATGATTACTCATGTCATTAAAGTCCCCTAACCCAGGTATTTCCTCCT
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TCCCATGACGAAAACAGTCCATTTAAACTTCACCCCACTTTGGACCCGAAAGTGGGGTGC
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ATTTTGGTGGTAAGCTCACCACAGAGCAAGAGAGAGTTAGAGTCCCTAATCTGCAGTGTA
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AACAAACTTTGCCAGGACATCACCAGCCCAACCTTGATAAGTACTGCTTGGAACTCCTCC
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ATGATGTTCTAGTCTTATTCGCAGTCTCATATAGGTTCGGATTTTGTCCATTCTCATAGC
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TACCAGTATACATGGGAGATGCCAGTTTCATCTTCCTTGCTTCACTTTATAAGCATAGTT
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ATATCANGAACTTCCTGGTTATAATTATGTTCCTTTCAAGTTTCATCATAATTGTCTAGT
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TCGATATAGTACATGGACACAATTAAATATGATATTGTCT
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>Scaffold9299
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CAGCATCTACATAATATGATCGCTATTAAACTTAAATCTCCTTGACGGAGTCTTCGGTCA
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TAACACAAACCCAGACCTACGTATATGACAAAGCTAATAGGAAAAGCATCCTTGTTTGTT
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TCACTATGCTTTTTAATGGTTGACGTTAAaggtaaagaccagtattggaaacgccccaat
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ttcaaaaaatgaaatggaagctctcattaccaatcatgtgaaagaatatgttttgactaa
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tacatgatgataaaaaaattgccgggaaaccgcctactaattcatatatttagtaaattt
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gtttctctcatggtctgtgagagatatagggtagtcccatatacatctttctgtgtatag
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tgcttgtaactttacgaagaatgggccaaatttcttatcattttgatgattccagaacct
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tgcagatgcgagatggtagatgatcaaccttttctgatcgattccataacgtttctttca
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caatgcaatcgcatgaccataactggtctttacctTTAAGTTGTAGGTCTTAATTGATAA
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CACTATATAGTTTTTTTCTTTTTACTGTTTTTATTAATGACCTCTGTAATTTGCCCTATT
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GTGAAAATACTAAAATATGTTTATACGCCGATGATGCGGCAATATTTTGCCAAGGCAAAG
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AAATTGCCCTTGTTGAGAAAACTCTTAAATGTGAGTTTAAAAAAATAGTTGATCACATTG
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AAAAAGATGACTTAATGTTGAATATCAAGAAGTGTAAGATCATGTTATTTGGGACAAGAA
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AACGAATCAAAAATCAAAGTGTACGCTTGATTTACAGAGATAATGTTATCGAAGTTGTAA
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ATGAATTTAAATATCTTGGTGTATTATTTGATAATTATTTAAAGTGGGATATACATATAT
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CGAAAACTGCCTCCAAAATATCTAGAACCATATCATGTATAAAACGAATTAAATATTATT
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TGCCGAAAAGAATTTTAAAATTGTTATATGATAGTTTGATATTGTCACATATTGACTACG
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GTATTGTTTTGTGGGGATGTTCAGCAAAGTGTCATTTGGAAAAGTTACAAAAGTTACAAA
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ATCGTTATGCCCGTTTAATACTAAACGTAGATATTTTGACACCTCGTATTATATTATTAT
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CCTCTCTAAGATGGCAATCAGTTGTTCAGAGAGTGCAATACCAA
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>Scaffold9309
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GAAGGAAGAAGAGGAAAATAATGATGAATTTGTAGAATTTCTATAACGTATGAAAACATA
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AACAACATGAAAAAGTATGAACCGACAGAAGAATGAAAATTTCAATCATATAACATGTCA
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TTCACTTCTCTTCTCTGACTGTCAAGTATTAGGTATTCCTTTTTATTTCCTCTTAAAATG
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ATCATAGTTTCCTATTTCTTTTACACCATTGGGAAGGGAATTCCAATGTTTTATGGCATT
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GTAATAAAACGAATTTCCAATACTACCTACTCTTTCTGGTAAGTTAAAGTTGAATCGGCT
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ATTTCTTGTATTATAATCATGTACGTCAGTAACAAGATCGAAGTTGGATCGAATATAATG
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ATTCGACCTAGTATGATATATTTTATGCACGTGATGCAATACGAGTTGTTTTGATCTTTG
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GTCGACTTCAAGAAAACCAGCTTTAGAAAGTTCGCTGTAGCCAACATGAGTTCTTGCCTT
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GGACTAGAACAGTTGATAAATCTCACCATTTTGTTCTTTAAGATGGGTAGAAGAATCCCT
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GCAATCTAAATGGTCAATTACTGTGAAGTTATTTTTACTGGATGCACCCAATAttttttt
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gataatttttttttctttgataatttttttctttttctttaataaattttttggataatt
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tttttttggataaatagttcttttttgataattctaataatttttttatttatttttttt
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ttttctataattttttttaaaaaatttattaatttttaattaaaaaaaaaataaGAGTTA
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ACAGATTAAGGGAAACTGACAATTCAAAAAAAAAAAAAA
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>Scaffold9310
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GCGGGGGCTGGGGAGGAAGGGGTGGCGTTATTTCACTTCCGATCTAATACGCTTTCTTAA
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GACACTGAAATATCAGTAGGTATTGGTATAGAGAATTACTTTTTATTTTTAATTAAAACA
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TTATCGAAATGAAGATACAGAGAAAAACGATGAGATGTAAGAAGTGCGCGTATTTAtgtg
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tgtgggtgcgtgtgtgtgtgtgtgtgtgtgttgtgtgcgtgcgtgtgtgtggtggtgtgt
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ACTAATTTTGATGTGTGTTGTGGCACAATTGCAATCATCAGTATCTTCATGAAAATGATA
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ACCAGAAGCACAAAAAGGAGGgtgcgtgtgtgtgtgtgtgtgtttagtgtgcgtgcgtgt
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gagggtgtttaagtgtgtatgtCGGAAATGTGGCACAATTGCAATCATCTGTATCTTCAT
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GAAAATGATAACCAGAAGAACAAAAAAAAAAAACATTGAGAGAACATGTTTTTTTGATGG
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AAGACAAGAAGTTCTCGTAACGTAGGATCTCCGAGACATGATGGGGTCAACTTAAAAAGA
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GAGCAGTGAGAGGCATTTATATCGAAGGTCAGGGAAAGGCAAACAAAGAAAGAAAAAAAA
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AAGGCTCACAGGAGAACGAAAACACGGGCCAAAATAATAAACAGGAGCAAGTGAACGGGC
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AGTTTGGTAGCTACTTCATTTACCGGCTTTTAAaggtactatgtcccatttgcaggtcaa
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aaaaaatgaaaaagttaaattccaactgcatttgaaagataatactaatttacaacttcc
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ctaaaaaaggtggggcttgaaaatgtcttcaagtgcggaaaataacgactattagttgtc
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aaatcgactttagggCTATAGAGCCCAAAAGTAATAGTCTTGA
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>Scaffold11911
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TTCTTGGCACCCCCCCCCCCCCCACACTCCTGCACTGAAGAACTACTCAAGTTTAAACTT
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TGCATTGCTTTTCTTTCTTTTTCAGTATTTTTTGCTTGGTACATGTTTCTCTTAATATCT
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GTCGTATAGatttttaatatttttatttatatCTACGTCAATCTGGCTGttctttttctt
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gtcttctttttttttctctctcttttttttcctcgtattttGTATTGATCCTTACCCTAG
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TTTTTGAACTTGAACAGCAATTTGCAGCACTCAAATTTCTTTAAAATTACCTTCTCTTAT
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TTGtctctgttcccctctccccccctctctctctctctctctctctctctctctctctct
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ttcATCTCCCATATCATAATTTGAAGTACCATCTATGGTGTTTTCAGATTGATCTTTCTT
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GCTTTCCCCACCCTCCCCCTTTATGCAGTTAATTTTCAGTCTATTTGTGTTTTCTGTGGT
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TGATTCTAATCATATTCTAACTCTTATTTTACATTTTACTTCACTAACAACTGGTTTATT
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ATATTTGTTACTAATTTTGAATTAAACTATTTACCATTCTGAACGAACTGAAAGATTAAA
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GATCAAACTATCTATGAATAGAATGGTATTTCTTCAATTTATTCAAATTTCTCTCTCTTT
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AACCCCCTTTTTCTGCTTGCATTTTTATCCCTTTGCCGTGGACTTCACTGGATATTTTGC
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TTTGATGCCAATCCAACAATTTTGCATATATTA

‎tool_collections/fastx_toolkit/fasta_clipping_histogram/test-data/fasta_clipping_histogram-out1.png‎

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‎tool_collections/fastx_toolkit/fasta_clipping_histogram/test-data/fasta_clipping_histogram-out2.png‎

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‎tool_collections/fastx_toolkit/fasta_clipping_histogram/test-data/input.fasta‎

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>sequence1
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AGTAGTAGGTGATGTAGAGAGAGAGAGAGTAG
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>sequence2
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GTGTGTGTGGGAAGTTGACACAGTA
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>sequence3
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CCTTGAGATTAACGCTAATCAAGTAAAC

‎tool_collections/fastx_toolkit/fasta_formatter/.shed.yml‎

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homepage_url: http://hannonlab.cshl.edu/fastx_toolkit/
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categories:
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- Fasta Manipulation
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description: FASTA Width formatter
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long_description: |
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This tool re-formats a FASTA file, changing the width of the nucleotides lines.
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name: fasta_formatter
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owner: devteam
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remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fasta_formatter
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type: unrestricted

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