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Improve formatting before snippets
- Investigate why snippet blocks must follow numbering lists (doesn't work with bullet lists or normal text, at least for local rendering)
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topics/microbiome/tutorials/metagenomics-assembly/tutorial.md

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@@ -121,7 +121,7 @@ In case of a not very large dataset it's more convenient to upload data directly
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> <hands-on-title>Upload data into Galaxy</hands-on-title>
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>
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> - The information we need to import the samples for this tutorial (Sample ID, and link to the FASTQ file (URL) are in the grey box below.
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> 1. The information we need to import the samples for this tutorial (Sample ID, and link to the FASTQ file URL) are in the grey box below.
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>
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> ```text
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> SampleID URL
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>
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> {% snippet faqs/galaxy/datasets_import_via_link.md %}
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>
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> Import the files from Zenodo using Galaxy's Rule-based Uploader.
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> 2. Import the files from Zenodo using Galaxy's Rule-based Uploader.
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> - Open the Galaxy Upload Manager
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> - Click the tab **Rule-based**
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> - Paste the table.
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> - Click "Apply" and then "Upload".
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>
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>
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> - Create a paired collection named `Raw reads`, rename your pairs with the sample name
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> 3. Create a paired collection named `Raw reads`, rename your pairs with the sample name
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>
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> {% snippet faqs/galaxy/collections_build_list_paired.md %}
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>
@@ -321,28 +321,25 @@ Assemblies can be evaluated with **metaQUAST** ({%cite mikheenko2016%}), the met
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> - *"Output files"*: `HTML report`, `PDF report`, `Tabular reports`, `Log file`, `Key metric summary (metagenome mode)`, `Krona charts (metagenome mode without reference genomes)`
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>
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> 2. Inspect the HTML reports:
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> ![Screenshot of QUAST HTML report](./images/quast_html_report.png)s
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> ![Screenshot of QUAST HTML report](./images/quast_html_report.png)
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{: .hands_on}
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> <comment-title></comment-title>
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> <hands-on-title>Import MetaQUAST results</hands-on-title>
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>
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> Since the QUAST process would take times we are just going to import the results:
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> 1. Since the QUAST process would take times we are just going to import the results from [Zenodo]({{ page.zenodo_link }}):
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>
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> > <hands-on-title>Import generated metaQUAST results</hands-on-title>
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> >
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> > 1. Import the metaQUAST report file from [Zenodo]({{ page.zenodo_link }}) or the Shared Data library:
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> >
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> > ```text
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> > {{ page.zenodo_link }}/files/QUAST_ERR2231567.html
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> > {{ page.zenodo_link }}/files/QUAST_ERR2231568.html
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> > {{ page.zenodo_link }}/files/QUAST_ERR2231569.html
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> > {{ page.zenodo_link }}/files/QUAST_ERR2231570.html
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> > {{ page.zenodo_link }}/files/QUAST_ERR2231571.html
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> > {{ page.zenodo_link }}/files/QUAST_ERR2231572.html
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> > ```
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> >
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> {: .hands_on}
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{: .comment}
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> ```text
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> {{ page.zenodo_link }}/files/QUAST_ERR2231567.html
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> {{ page.zenodo_link }}/files/QUAST_ERR2231568.html
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> {{ page.zenodo_link }}/files/QUAST_ERR2231569.html
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> {{ page.zenodo_link }}/files/QUAST_ERR2231570.html
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> {{ page.zenodo_link }}/files/QUAST_ERR2231571.html
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> {{ page.zenodo_link }}/files/QUAST_ERR2231572.html
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> ```
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>
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> {% snippet faqs/galaxy/datasets_import_via_link.md %}
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>
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{: .hands_on}
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QUAST main output are HTML reports which aggregate different metrics.
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