Merge pull request #6428 from Sch-Da/2026_03_HTS_v3

Adding Freiburg Galaxy Workshop Event 2026 03

Author: bgruening

events/2026-03-09-hts-workshop-freiburg.md

@@ -0,0 +1,135 @@
+---
+layout: event
+title: "Workshop on high-throughput sequencing data analysis with Galaxy"
+
+# external: "https://galaxyproject.org/events/2025-03-10-galaxy-workshop-freiburg/"
+
+description: |
+    This course introduces scientists to the data analysis platform Galaxy. The course is designed for beginners; no prior programming skills are required.
+
+date_start: 2026-03-09
+date_end: 2026-03-13
+
+cost: free
+audience: Scientists with no or little Galaxy experience who want to analyse sequencing data.
+contact_email: [email protected]
+# async: false
+mode: onsite
+
+registration:
+  link: https://forms.gle/1C2iHiEjmPJMiCaK6
+  deadline: 2026-02-08
+
+contributions:
+  organisers: [Sch-Da]
+  instructors: [dianichj, bgruening, Nilchia, wm75, paulzierep]
+  funding: [deNBI, nfdi4plants]
+
+location:
+  geo:
+    lat: 47.993460
+    lon: 7.845110
+  name: University of Freiburg
+  address: Werthmannstrasse 4
+  postcode: 79098
+  city: Freiburg
+  country: Germany
+
+infrastructure:
+  tiaas: true    # tiaas = Training Infrastructure as a Service, and can be requested (for free) from all major Galaxies
+
+  servers:
+    - server: https://usegalaxy.eu
+      name: Galaxy EU
+
+tags:
+- introduction
+- sequence-analysis
+- epigenetics
+- transcriptomics
+- variant-analysis
+- microbiome
+
+# Program of your course
+# Add GTN tutorials by supplying the topic and tutorial name
+program:
+  - section: "Monday: Introduction and Quality Control"  # section title is optional
+    description: We will take at least one coffee break in the morning, one in the afternoon, and 1h lunch break around noon.
+    tutorials:
+      - type: custom
+        name: "Welcome"
+        time: "09:15"
+      - name: galaxy-intro-peaks2genes
+        topic: introduction
+      - name: quality-control
+        topic: sequence-analysis
+      - type: custom
+        name: "End"
+        time: "16:00"
+
+  - section: "Tuesday: ChIP-Sequencing"
+    description: We will take at least one coffee break in the morning, one in the afternoon, and 1h lunch break around noon.
+    tutorials:
+      - name: formation_of_super-structures_on_xi
+        topic: epigenetics
+        time: "09:15-17:00"
+
+  - section: "Wednesday: RNA Sequencing"
+    description: We will take at least one coffee break in the morning, one in the afternoon, and 1h lunch break around noon.
+    tutorials:
+      - name: ref-based
+        topic: transcriptomics
+        time: "09:15-17:00"
+
+
+  - section: "Thursday: Variant Calling/Exome Sequencing"
+    description:  We will take at least one coffee break in the morning, one in the afternoon, and 1h lunch break around noon.
+    tutorials:
+      - name: exome-seq
+        topic: variant-analysis
+        time: "09:15-17:00"
+
+
+  - section: "Friday: Metagenomics"
+    description:  We will take at least one coffee break in the morning, one in the afternoon, and 1h lunch break around noon.
+    tutorials:
+      - name: pathogen-detection-from-nanopore-foodborne-data
+        topic: microbiome
+        time: "09:15-16:00"
+
+---
+# Welcome to the Comprehensive Galaxy Workshop: From Introduction to Advanced Applications
+
+Embark on a deep dive into the world of Galaxy, the leading platform for data-intensive biomedical research. This workshop is designed for researchers, students, and data analysts who wish to
+harness the full potential of Galaxy in various genomic studies. Whether you're a beginner seeking to understand the basics or an intermediate user looking to refine your skills in specific applications,
+this workshop offers valuable insights and hands-on experiences.
+
+This comprehensive workshop will increase your proficiency in using Galaxy and enhance your ability to conduct sophisticated analyses in various fields of biological research.
+Connect with experts and peers, gain practical skills, and take your research capabilities to the next level.
+
+## Topics:
+
+- Galaxy Introduction and Quality Control
+- ChIP-seq Analysis
+- RNA-seq Analysis
+- Variant Calling
+- Microbiome Analysis
+
+## Learning Objectives:
+
+- To get introduced to Galaxy as a data analysis platform and the GTN training material
+- To learn how to use tools and databases in Galaxy
+- To be able to run different tools and workflows
+
+## Schedule
+
+Please see the Program tab.
+
+## Registaion
+
+The number of places in this workshop is limited. The course is conducted in person only (not online or hybrid). 
+Please note that the tutorials on which this workshop is based are all accessible through Open Educational Resources via the Galaxy Training Material. 
+Please click on the Program tab and the content for the respective day to view more information.
+There are no fees for the workshop; however, you will need to cover your own accommodation, travel costs, and catering expenses.
+
+