Enhance tutorial with peptide annotation and queries #6516
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Add peptide annotation and querying steps for weak and strong neopeptides.
Added details about the iPepGen workflow outputs and integration with pVACbind software for neoantigen identification. Included a disclaimer regarding workflow input validation.
…ion/workflows/main_workflow.ga
…generation/workflows/main_workflow.ga
Added a disclaimer regarding workflow failures and input verification.
Added a disclaimer regarding workflow failures and input verification.
…flows/main_workflow.ga
…rkflow.ga to main_workflow.ga
…rkflows/main_workflow.ga
…flows/main_workflow.ga
Added a disclaimer regarding workflow failures and input verification.
…workflows/main_workflow.ga
Added a disclaimer about input file verification for workflow failures.
Updated disclaimer section to improve clarity and formatting.
Refactor tutorial for neoantigen variant annotation to improve clarity and organization. Update sections on extracting peptides, converting coordinates, and integrating with PepPointer.
Updated disclaimer section to use comment formatting.
Updated disclaimer section to use comment formatting.
Updated disclaimer section to a comment format for clarity.
Added a disclaimer regarding workflow failures and input verification.
Updated disclaimer section to use comment format.
…flows/main_workflow.ga
Added a disclaimer about input file verification before troubleshooting workflow issues.
Updated workflow instructions for clarity and added a step for searching workflows.
PratikDJagtap
approved these changes
Nov 29, 2025
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Update peptide annotation and querying steps for weak and strong neopeptides.
Add disclaimers for workflow errors and troubleshooting