Mutable configs

Author: natefoo

env/main/files/galaxy/var/integrated_tool_panel.xml

@@ -4851,6 +4851,8 @@
 
         <tool id="toolshed.g2.bx.psu.edu/repos/richard-burhans/kegalign/kegalign/0.1.2.8+galaxy0" />
 
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/ucsc_axtchain/ucsc_axtchain/482+galaxy1" />
+
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy4" />
 
         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.3.2" />
@@ -7033,6 +7035,8 @@
 
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/checkm2/checkm2/1.1.0+galaxy0" />
 
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/mash_sketch/mash_sketch/2.3+galaxy3" />
+
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_masking/2.8.3.0" />
 
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_alignment/2.8.3.0" />
@@ -10863,6 +10867,8 @@
 
         <tool id="toolshed.g2.bx.psu.edu/repos/goeckslab/tabular_learner/tabular_learner/0.1.0.1" />
 
+        <tool id="toolshed.g2.bx.psu.edu/repos/goeckslab/image_learner/image_learner/0.1.2" />
+
         <tool id="toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_pairwise_metrics/sklearn_pairwise_metrics/1.0.7.12" />
 
         <tool id="toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_nn_classifier/sklearn_nn_classifier/1.0.7.12" />
@@ -15443,6 +15449,10 @@
 
         <tool id="toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_compare/imagemagick_image_compare/7.1.2-2+galaxy0" />
 
+        <tool id="toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_convert/imagemagick_image_convert/7.1.2-2+galaxy1" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_montage/imagemagick_image_montage/7.1.2-2+galaxy1" />
+
     </section>
 
 </toolbox>

env/main/files/galaxy/var/shed_tool_conf.xml

@@ -11542,6 +11542,14 @@
             <id>toolshed.g2.bx.psu.edu/repos/richard-burhans/kegalign/kegalign/0.1.2.8+galaxy0</id>
             <version>0.1.2.8+galaxy0</version>
         </tool>
+        <tool file="toolshed.g2.bx.psu.edu/repos/iuc/ucsc_axtchain/64d732725a73/ucsc_axtchain/axtchain.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/ucsc_axtchain/ucsc_axtchain/482+galaxy1">
+            <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>ucsc_axtchain</repository_name>
+            <repository_owner>iuc</repository_owner>
+            <installed_changeset_revision>64d732725a73</installed_changeset_revision>
+            <id>toolshed.g2.bx.psu.edu/repos/iuc/ucsc_axtchain/ucsc_axtchain/482+galaxy1</id>
+            <version>482+galaxy1</version>
+        </tool>
     </section>
     <section id="mapping" name="Mapping" version="">
         <tool file="toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/c1ec08cb34f9/bowtie2/bowtie2_wrapper.xml" guid="toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/0.3" hidden="true">
@@ -18720,6 +18728,14 @@
             <id>toolshed.g2.bx.psu.edu/repos/iuc/checkm2/checkm2/1.1.0+galaxy0</id>
             <version>1.1.0+galaxy0</version>
         </tool>
+        <tool file="toolshed.g2.bx.psu.edu/repos/iuc/mash_sketch/9de5319ad2db/mash_sketch/mash_sketch.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/mash_sketch/mash_sketch/2.3+galaxy3">
+            <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>mash_sketch</repository_name>
+            <repository_owner>iuc</repository_owner>
+            <installed_changeset_revision>9de5319ad2db</installed_changeset_revision>
+            <id>toolshed.g2.bx.psu.edu/repos/iuc/mash_sketch/mash_sketch/2.3+galaxy3</id>
+            <version>2.3+galaxy3</version>
+        </tool>
     </section>
     <section id="metagenomic_analysis" name="Metagenomic Analysis" version="">
         <tool file="toolshed.g2.bx.psu.edu/repos/iuc/vegan_diversity/c58e19ff504a/vegan_diversity/vegan_diversity.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/vegan_diversity/vegan_diversity/0.0.2">
@@ -41309,6 +41325,14 @@
             <id>toolshed.g2.bx.psu.edu/repos/goeckslab/tabular_learner/tabular_learner/0.1.0.1</id>
             <version>0.1.0.1</version>
         </tool>
+        <tool file="toolshed.g2.bx.psu.edu/repos/goeckslab/image_learner/c5150cceab47/image_learner/image_learner.xml" guid="toolshed.g2.bx.psu.edu/repos/goeckslab/image_learner/image_learner/0.1.2">
+            <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>image_learner</repository_name>
+            <repository_owner>goeckslab</repository_owner>
+            <installed_changeset_revision>c5150cceab47</installed_changeset_revision>
+            <id>toolshed.g2.bx.psu.edu/repos/goeckslab/image_learner/image_learner/0.1.2</id>
+            <version>0.1.2</version>
+        </tool>
     </section>
     <section id="machine_learning" name="Machine Learning" version="">
         <tool file="toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_discriminant_classifier/7696d389675c/sklearn_discriminant_classifier/discriminant.xml" guid="toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_discriminant_classifier/sklearn_discriminant_classifier/1.0.7.12">
@@ -71687,5 +71711,21 @@
             <id>toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_compare/imagemagick_image_compare/7.1.2-2+galaxy0</id>
             <version>7.1.2-2+galaxy0</version>
         </tool>
+        <tool file="toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_convert/3c62b046bc3d/imagemagick_image_convert/convert.xml" guid="toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_convert/imagemagick_image_convert/7.1.2-2+galaxy1">
+            <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>imagemagick_image_convert</repository_name>
+            <repository_owner>bgruening</repository_owner>
+            <installed_changeset_revision>3c62b046bc3d</installed_changeset_revision>
+            <id>toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_convert/imagemagick_image_convert/7.1.2-2+galaxy1</id>
+            <version>7.1.2-2+galaxy1</version>
+        </tool>
+        <tool file="toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_montage/65703c06c1f6/imagemagick_image_montage/montage.xml" guid="toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_montage/imagemagick_image_montage/7.1.2-2+galaxy1">
+            <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>imagemagick_image_montage</repository_name>
+            <repository_owner>bgruening</repository_owner>
+            <installed_changeset_revision>65703c06c1f6</installed_changeset_revision>
+            <id>toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_montage/imagemagick_image_montage/7.1.2-2+galaxy1</id>
+            <version>7.1.2-2+galaxy1</version>
+        </tool>
     </section>
 </toolbox>

env/test/files/galaxy/var/integrated_tool_panel.xml

@@ -3875,6 +3875,8 @@
 
         <tool id="toolshed.g2.bx.psu.edu/repos/goeckslab/tabular_learner/tabular_learner/0.1.0.1" />
 
+        <tool id="toolshed.g2.bx.psu.edu/repos/goeckslab/image_learner/image_learner/0.1.2" />
+
         <tool id="toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_sample_generator/sklearn_sample_generator/1.0.8.4" />
 
         <tool id="toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.8.4" />
@@ -5511,6 +5513,8 @@
 
         <tool id="toolshed.g2.bx.psu.edu/repos/richard-burhans/kegalign/kegalign/0.1.2.8+galaxy0" />
 
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/ucsc_axtchain/ucsc_axtchain/482+galaxy1" />
+
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy4" />
 
         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.3.2" />
@@ -9757,6 +9761,8 @@
 
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/checkm2/checkm2/1.1.0+galaxy0" />
 
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/mash_sketch/mash_sketch/2.3+galaxy3" />
+
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/biom_add_metadata/biom_add_metadata/2.1.14+galaxy0" />
 
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/biom_convert/biom_convert/2.1.14+galaxy0" />
@@ -16695,6 +16701,10 @@
 
         <tool id="toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_compare/imagemagick_image_compare/7.1.2-2+galaxy0" />
 
+        <tool id="toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_convert/imagemagick_image_convert/7.1.2-2+galaxy1" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_montage/imagemagick_image_montage/7.1.2-2+galaxy1" />
+
     </section>
 
     <section id="lexicmap" name="Lexicmap" version="">