From c26ccb21ac9d0ee404bc7fdba65c715f425c3f5e Mon Sep 17 00:00:00 2001 From: Richard Burhans Date: Fri, 30 Aug 2024 13:08:04 -0400 Subject: [PATCH] set limit for ncbi_egapx to 48 hours --- env/common/templates/galaxy/config/tpv/tools.yaml.j2 | 2 ++ env/common/templates/galaxy/config/tpv/tools_vgp.yaml.j2 | 2 ++ 2 files changed, 4 insertions(+) diff --git a/env/common/templates/galaxy/config/tpv/tools.yaml.j2 b/env/common/templates/galaxy/config/tpv/tools.yaml.j2 index c8d4b8a1..7d8216c0 100644 --- a/env/common/templates/galaxy/config/tpv/tools.yaml.j2 +++ b/env/common/templates/galaxy/config/tpv/tools.yaml.j2 @@ -639,6 +639,8 @@ tools: toolshed.g2.bx.psu.edu/repos/richard-burhans/ncbi_egapx/ncbi_egapx/.*: cores: 64 mem: 480 + context: + time: 48:00:00 toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/.*: gpus: 1 diff --git a/env/common/templates/galaxy/config/tpv/tools_vgp.yaml.j2 b/env/common/templates/galaxy/config/tpv/tools_vgp.yaml.j2 index ba02ba3b..231a5096 100644 --- a/env/common/templates/galaxy/config/tpv/tools_vgp.yaml.j2 +++ b/env/common/templates/galaxy/config/tpv/tools_vgp.yaml.j2 @@ -142,6 +142,8 @@ tools: toolshed.g2.bx.psu.edu/repos/richard-burhans/ncbi_egapx/ncbi_egapx/.*: cores: 64 mem: 480 + context: + time: 48:00:00 toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/.*: gpus: 0.2