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PSeAAC on in-memory MoleculeLoader #46

@fkiraly

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@fkiraly

Once we introduce biopython Structure for representing proteins or amino-acid sequences, we should ensure that this is also a valid input for PSeAAC.

Steps to add this in a programmatic way:

  • in PSeAAC, separate transform into a boilerplate transform and an internal _transform which assumes string input
  • the boilerplate coerces Structure to str by extracting the amino-acid sequence
  • add tests for Structure input

(parked until the pdb / Structure layer is implemented)

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