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lines changed Original file line number Diff line number Diff line change 113113 ## it is, that refers to the index which was encoded first or second. We know
114114 ## that if you need to reverse complement any barcode, it's the one on Index 2,
115115 ## regardless of what order it was encoded in TuboWeb.
116- barcode_sequences = [reverse_compliment (bc ['barcode_sequence' ].upper ())
116+ barcode_sequences = [reverse_complement (bc ['barcode_sequence' ].upper ())
117117 if any (b ['revcom' ] is True for b in pool ['reverse_complement' ]) and bc ['barcode_location' ] == 3
118118 else bc ['barcode_sequence' ].upper ()
119119 for bc in sorted (barcodes , key = itemgetter ('barcode_location' ))]
134134with open ('demux.json' , 'w' ) as outfile :
135135 json .dump (pheniqs_conf , outfile , indent = 4 )
136136
137- print ("Pheniqs config file created for lane {}: demux.json" .format (lane ['lane_number' ]))
137+ print ("Pheniqs config file created for lane {}: demux.json" .format (lane ['lane_number' ]))
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