Merge branch 'develop' into feature/metainfo_editor_default_image

Author: Endalaner

Earthfile

@@ -8,7 +8,7 @@ ARG --global --required MAVEN_REGISTRY_RELEASES
 ARG --global --required MAVEN_REGISTRY_SNAPSHOTS
 
 build:
-    FROM eclipse-temurin:21.0.6_7-jdk-alpine
+    FROM eclipse-temurin:21.0.7_6-jdk-alpine
     DO github.com/genestack/earthly-libs+GRADLE_PREPARE
 
     CACHE /root/.gradle/caches

buildSrc/build.gradle.kts

@@ -7,5 +7,5 @@ repositories {
 }
 
 dependencies {
-    implementation("com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.18.3")
+    implementation("com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.19.0")
 }

gradle/libs.versions.toml

@@ -1,7 +1,7 @@
 # https://docs.gradle.org/current/userguide/platforms.html#sub::toml-dependencies-format
 
 [versions]
-openapiGenerator = "7.12.0"
+openapiGenerator = "7.13.0"
 
 [plugins]
 openapi-generator = { id = "org.openapi.generator", version.ref = "openapiGenerator" }

gradle/wrapper/gradle-wrapper.jar

@@ -1,14 +1,6 @@
-#
-# Copyright (c) 2011-2025 Genestack Limited
-# All Rights Reserved
-# THIS IS UNPUBLISHED PROPRIETARY SOURCE CODE OF GENESTACK LIMITED
-# The copyright notice above does not evidence any
-# actual or intended publication of such source code.
-#
-
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.13-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.14.1-bin.zip
 networkTimeout=10000
 validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME

gradle/wrapper/gradle-wrapper.properties

@@ -1,7 +1,7 @@
 VERSION 0.8
 
 swagger:
-    FROM swaggerapi/swagger-ui:v5.21.0
+    FROM swaggerapi/swagger-ui:v5.22.0
 
     COPY v1 /usr/share/nginx/html/yaml/
     COPY swagger/fs /
@@ -20,7 +20,7 @@ swagger:
     SAVE IMAGE --cache-hint
 
 explorer-build:
-    FROM node:22.14.0-alpine
+    FROM node:22.16.0-alpine
     DO github.com/genestack/earthly-libs+NPM_PREPARE
 
     CACHE /root/.npm
@@ -31,7 +31,7 @@ explorer-build:
     SAVE ARTIFACT node_modules/openapi-explorer/dist/browser/openapi-explorer.min.js
 
 explorer:
-    FROM nginxinc/nginx-unprivileged:1.27.4-alpine
+    FROM nginxinc/nginx-unprivileged:1.28.0-alpine
 
     COPY v1/schemas /usr/share/nginx/html/schemas/
     COPY v1/odmApi.yaml /usr/share/nginx/html/

gradlew

@@ -18026,6 +18026,9 @@ paths:
     post:
       operationId: "create"
       requestBody:
+        description: "Request body for creating a new xrefset.\n## Important:\nThe\
+          \ length of 'sourceId' strings is limited to 255 characters. Ensure that\
+          \ the provided values adhere to this limitation to avoid data truncation.\n"
         content:
           application/json:
             schema:
@@ -18073,7 +18076,9 @@ paths:
         targetId\" and \"sourceId\". If non-empty lists of values for \"targetId\"\
         \ and \"sourceId\" are supplied, the following search rule is applied: (sourceId\
         \ = \"S1\" OR .. sourceId = \"Sn\") AND (targetId = \"T1\" OR .. targetId\
-        \ = \"Tm\").\n\n"
+        \ = \"Tm\").\n## Important:\nThe length of 'sourceId' strings is limited to\
+        \ 255 characters. Ensure that the provided values adhere to this limitation\
+        \ to avoid data truncation.\n"
       operationId: "searchEntries"
       parameters:
       - description: "Supply sourceId in the format \"sourceId\". For transcript-gene\