diff --git a/Earthfile b/Earthfile
index 01045107..bd82aae3 100644
--- a/Earthfile
+++ b/Earthfile
@@ -73,7 +73,7 @@ python-api-client:
             pypi-clean.sh
 
 r-api-client:
-    FROM r-base:4.4.3
+    FROM r-base:4.4.2
     WORKDIR /app
 
     CACHE /root/.cache
diff --git a/gradle/wrapper/gradle-wrapper.properties b/gradle/wrapper/gradle-wrapper.properties
index 37f853b1..916a5890 100644
--- a/gradle/wrapper/gradle-wrapper.properties
+++ b/gradle/wrapper/gradle-wrapper.properties
@@ -1,3 +1,11 @@
+#
+# Copyright (c) 2011-2025 Genestack Limited
+# All Rights Reserved
+# THIS IS UNPUBLISHED PROPRIETARY SOURCE CODE OF GENESTACK LIMITED
+# The copyright notice above does not evidence any
+# actual or intended publication of such source code.
+#
+
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
 distributionUrl=https\://services.gradle.org/distributions/gradle-8.13-bin.zip
diff --git a/openapi/v1/fileCurator.yaml b/openapi/v1/fileCurator.yaml
index 8c66ce41..591e3860 100644
--- a/openapi/v1/fileCurator.yaml
+++ b/openapi/v1/fileCurator.yaml
@@ -118,6 +118,13 @@ paths:
           required: true
           schema:
             type: string
+        - description: Select `true` in order to include file structure (contents) for .h5, .h5ad, .zip, .gz to the response.
+          in: query
+          name: includeContents
+          required: false
+          schema:
+            default: false
+            type: boolean
       responses:
         "200":
           content:
@@ -171,6 +178,13 @@ paths:
           description: Search for files via a full-text query over all file metadata.
           schema:
             type: string
+        - in: query
+          name: includeContents
+          description: Select `true` in order to include file structure (contents) for .h5, .h5ad, .zip, .gz to the response.
+          required: false
+          schema:
+            default: false
+            type: boolean
         - in: query
           name: pageLimit
           description: Maximum number of results to return per page (see Paging above). This value must be
diff --git a/openapi/v1/fileUser.yaml b/openapi/v1/fileUser.yaml
index 8f361edd..6bbf2e5e 100644
--- a/openapi/v1/fileUser.yaml
+++ b/openapi/v1/fileUser.yaml
@@ -119,6 +119,13 @@ paths:
           required: true
           schema:
             type: string
+        - description: Select `true` in order to include file structure (contents) for .h5, .h5ad, .zip, .gz to the response.
+          in: query
+          name: includeContents
+          required: false
+          schema:
+            default: false
+            type: boolean
       responses:
         "200":
           content:
@@ -172,6 +179,13 @@ paths:
           description: Search for files via a full-text query over all file metadata.
           schema:
             type: string
+        - in: query
+          name: includeContents
+          description: Select `true` in order to include file structure (contents) for .h5, .h5ad, .zip, .gz to the response.
+          required: false
+          schema:
+            default: false
+            type: boolean
         - in: query
           name: pageLimit
           description: Maximum number of results to return per page (see Paging above). This value must be
diff --git a/openapi/v1/integrationCurator.yaml b/openapi/v1/integrationCurator.yaml
index 51018bea..2502b5ff 100644
--- a/openapi/v1/integrationCurator.yaml
+++ b/openapi/v1/integrationCurator.yaml
@@ -6656,6 +6656,13 @@ paths:
           required: true
           schema:
             type: string
+        - description: Select `true` in order to include file structure (contents) for .h5, .h5ad, .zip, .gz to the response.
+          in: query
+          name: includeContents
+          required: false
+          schema:
+            default: false
+            type: boolean
       responses:
         "200":
           content:
diff --git a/openapi/v1/integrationUser.yaml b/openapi/v1/integrationUser.yaml
index e6f421c2..2a6c3495 100644
--- a/openapi/v1/integrationUser.yaml
+++ b/openapi/v1/integrationUser.yaml
@@ -5074,6 +5074,13 @@ paths:
           required: true
           schema:
             type: string
+        - description: Select `true` in order to include file structure (contents) for .h5, .h5ad, .zip, .gz to the response.
+          in: query
+          name: includeContents
+          required: false
+          schema:
+            default: false
+            type: boolean
       responses:
         "200":
           content:
diff --git a/openapi/v1/odmApi.yaml b/openapi/v1/odmApi.yaml
index 33675920..416a1449 100644
--- a/openapi/v1/odmApi.yaml
+++ b/openapi/v1/odmApi.yaml
@@ -1551,6 +1551,14 @@ paths:
         required: true
         schema:
           type: "string"
+      - description: "Select `true` in order to include file structure (contents)\
+          \ for .h5, .h5ad, .zip, .gz to the response."
+        in: "query"
+        name: "includeContents"
+        required: false
+        schema:
+          default: false
+          type: "boolean"
       responses:
         "200":
           content:
@@ -1610,6 +1618,14 @@ paths:
         description: "Search for files via a full-text query over all file metadata."
         schema:
           type: "string"
+      - in: "query"
+        name: "includeContents"
+        description: "Select `true` in order to include file structure (contents)\
+          \ for .h5, .h5ad, .zip, .gz to the response."
+        required: false
+        schema:
+          default: false
+          type: "boolean"
       - in: "query"
         name: "pageLimit"
         description: "Maximum number of results to return per page (see Paging above).\
@@ -1767,6 +1783,14 @@ paths:
         required: true
         schema:
           type: "string"
+      - description: "Select `true` in order to include file structure (contents)\
+          \ for .h5, .h5ad, .zip, .gz to the response."
+        in: "query"
+        name: "includeContents"
+        required: false
+        schema:
+          default: false
+          type: "boolean"
       responses:
         "200":
           content:
@@ -1826,6 +1850,14 @@ paths:
         description: "Search for files via a full-text query over all file metadata."
         schema:
           type: "string"
+      - in: "query"
+        name: "includeContents"
+        description: "Select `true` in order to include file structure (contents)\
+          \ for .h5, .h5ad, .zip, .gz to the response."
+        required: false
+        schema:
+          default: false
+          type: "boolean"
       - in: "query"
         name: "pageLimit"
         description: "Maximum number of results to return per page (see Paging above).\
@@ -10300,6 +10332,14 @@ paths:
         required: true
         schema:
           type: "string"
+      - description: "Select `true` in order to include file structure (contents)\
+          \ for .h5, .h5ad, .zip, .gz to the response."
+        in: "query"
+        name: "includeContents"
+        required: false
+        schema:
+          default: false
+          type: "boolean"
       responses:
         "200":
           content:
@@ -15759,6 +15799,14 @@ paths:
         required: true
         schema:
           type: "string"
+      - description: "Select `true` in order to include file structure (contents)\
+          \ for .h5, .h5ad, .zip, .gz to the response."
+        in: "query"
+        name: "includeContents"
+        required: false
+        schema:
+          default: false
+          type: "boolean"
       responses:
         "200":
           content: