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README.md

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README.md

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ODM-starter-pack

This repo contains auxiliary scripts for facilitating working with Omics Data Manager along with instructions and training materials:

  1. Packages to install
    1. Python odm-sdk
  2. Users
    1. User creation
  3. Templates
    1. Create / update a template
    2. Delete template
  4. Dictionaries and ontologies
    1. Default dictionaries
    2. Exporting ontologies from ODM
    3. Creating new dictionary
    4. Loading new ontology
  5. Working with study
    1. Loading a study
      1. Instruction
      2. Data requirements
      3. Examples
    2. Curation a study
    3. Sharing a study
    4. Deleting a study
    5. Loading from GEO
  6. Data Retrieving
  7. Training materials
    1. ODM Configuration Guide
    2. ODM Basic Training
    3. ODM Advanced Training