Skip to content

Commit 7c87002

Browse files
authored
Merge pull request #92 from genestack/feature/supported-data-tabular
Tabular Data Section
2 parents d709ef9 + 5865ac8 commit 7c87002

File tree

1 file changed

+49
-1
lines changed

1 file changed

+49
-1
lines changed

docs/user-guide/supported-data/supported-data.md

Lines changed: 49 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -51,12 +51,60 @@
5151

5252
## TSV (Tabular data)
5353

54-
## GCT (Gene xpression)
54+
In ODM, you can upload any tabular data formatted as **TSV (tab-separated values)**.
55+
As long as your file represents a data frame, ODM can import and index it. A data frame is a data structure that
56+
organizes data into a two-dimensional table of **rows** and **columns**, similar to a spreadsheet.
57+
58+
A data frame contains two main elements:
59+
60+
- **Features**: These are the entities measured in an experiment (e.g., genes, proteins, metabolites,
61+
pathways, sales regions, etc.).
62+
- **Measurements (or values)**: These are the actual values recorded for each feature under different
63+
conditions (e.g., gene expression values, protein abundance, pathway activity, sales volume, etc.).
64+
65+
### Simple Data Frame
66+
67+
The example below demonstrates the simplest and most common type of data frame.
68+
69+
![Data Frame Simple](../doc-odm-user-guide/doc-odm-user-guide/images/data-frame1.png)
70+
71+
Here, the features (genes)
72+
are listed in the first column, while the rest of the table contains measurements of gene expression across
73+
multiple samples. Each column represents a different sample, with the column name indicating the
74+
corresponding dataset of gene expression values.
75+
76+
### Complex Data Frame
77+
78+
![Data Frame Complex](../doc-odm-user-guide/doc-odm-user-guide/images/data-frame2.png)
79+
80+
This format provides a wide range of data types that can be uploaded and indexed in ODM.
81+
82+
For a detailed description and instructions on using TSV, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)**
83+
in our **Advanced User Guide**.
84+
85+
## GCT (Gene Expression)
86+
87+
88+
89+
For a detailed description and instructions on using GCT, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)**
90+
in our **Advanced User Guide**.
5591

5692
## VCF (Variants)
5793

94+
For a detailed description and instructions on using VCF, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)**
95+
in our **Advanced User Guide**.
96+
5897
## HDF5 (e.g. Single Cell)
5998

99+
For a detailed description and instructions on using HDF5, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)**
100+
in our **Advanced User Guide**.
101+
60102
## FACS (Flow Cytometry)
61103

104+
For a detailed description and instructions on using FACS, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)**
105+
in our **Advanced User Guide**.
106+
62107
## Attached Files
108+
109+
For a detailed description and instructions on using Attached Files, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)**
110+
in our **Advanced User Guide**.

0 commit comments

Comments
 (0)