|
51 | 51 |
|
52 | 52 | ## TSV (Tabular data) |
53 | 53 |
|
54 | | -## GCT (Gene xpression) |
| 54 | +In ODM, you can upload any tabular data formatted as **TSV (tab-separated values)**. |
| 55 | +As long as your file represents a data frame, ODM can import and index it. A data frame is a data structure that |
| 56 | +organizes data into a two-dimensional table of **rows** and **columns**, similar to a spreadsheet. |
| 57 | + |
| 58 | +A data frame contains two main elements: |
| 59 | + |
| 60 | +- **Features**: These are the entities measured in an experiment (e.g., genes, proteins, metabolites, |
| 61 | +pathways, sales regions, etc.). |
| 62 | +- **Measurements (or values)**: These are the actual values recorded for each feature under different |
| 63 | +conditions (e.g., gene expression values, protein abundance, pathway activity, sales volume, etc.). |
| 64 | + |
| 65 | +### Simple Data Frame |
| 66 | + |
| 67 | +The example below demonstrates the simplest and most common type of data frame. |
| 68 | + |
| 69 | + |
| 70 | + |
| 71 | +Here, the features (genes) |
| 72 | +are listed in the first column, while the rest of the table contains measurements of gene expression across |
| 73 | +multiple samples. Each column represents a different sample, with the column name indicating the |
| 74 | +corresponding dataset of gene expression values. |
| 75 | + |
| 76 | +### Complex Data Frame |
| 77 | + |
| 78 | + |
| 79 | + |
| 80 | +This format provides a wide range of data types that can be uploaded and indexed in ODM. |
| 81 | + |
| 82 | +For a detailed description and instructions on using TSV, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)** |
| 83 | +in our **Advanced User Guide**. |
| 84 | + |
| 85 | +## GCT (Gene Expression) |
| 86 | + |
| 87 | + |
| 88 | + |
| 89 | +For a detailed description and instructions on using GCT, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)** |
| 90 | +in our **Advanced User Guide**. |
55 | 91 |
|
56 | 92 | ## VCF (Variants) |
57 | 93 |
|
| 94 | +For a detailed description and instructions on using VCF, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)** |
| 95 | +in our **Advanced User Guide**. |
| 96 | + |
58 | 97 | ## HDF5 (e.g. Single Cell) |
59 | 98 |
|
| 99 | +For a detailed description and instructions on using HDF5, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)** |
| 100 | +in our **Advanced User Guide**. |
| 101 | + |
60 | 102 | ## FACS (Flow Cytometry) |
61 | 103 |
|
| 104 | +For a detailed description and instructions on using FACS, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)** |
| 105 | +in our **Advanced User Guide**. |
| 106 | + |
62 | 107 | ## Attached Files |
| 108 | + |
| 109 | +For a detailed description and instructions on using Attached Files, visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)** |
| 110 | +in our **Advanced User Guide**. |
0 commit comments