Merge pull request #96 from genestack/feature/advGuide-quickStart

Ex Quick Start Guide page is updated

Author: MikhailAf

docs/user-guide/doc-odm-user-guide/doc-odm-user-guide/gif/facets.gif

@@ -1,4 +1,10 @@
-# User Quick Start Guide
+# Start
+
+On this page we briefly show main pages of the ODM: Dashboard, Study Browser, Metadata Editor. 
+
+For more details about Study Browser and Metadata Editor functionality refer to corresponding guide page. 
+
+![StartGIF](doc-odm-user-guide/gif/start.gif)
 
 The first thing you see when logging in to Open Data Manager is the Dashboard:
 
@@ -11,28 +17,43 @@ link from the dashboard takes you to the Study Browser to help you do this.
 
 ## Study Browser
 
-![image](doc-odm-user-guide/images/quickstart_user_studybrowser.png)
+!!! info "Limitation"
+    Only Studies you have permission to observe (Studies created by you or Studies shared with your group of users 
+    by another user) are displayed as default.
 
-By default all studies are shown that you have permission to see, but since you aren’t expected to scroll through
-thousands of studies there are, of course, search and filtering options to help you find studies of interest.
-These are given in the left hand panel of the Study Browser and they allow you to search by study name, accession or
-by the text present in any metadata field.
+There is search and filtering options to help you find studies of interest.
+Facets in the left hand panel of the Study Browser and Search bar allow you to search by study name, accession or
+by any value presented in any metadata field.
 
-#### NOTE
+!!! tip
+    Harmonising your Study and its child entities (Samples, Libraries, Preparations, Data) Metadata values by using 
+    configurable validation rules helps you to find all relevant values by preventing missed results due to 
+    non-standard terms usage.
 
-Harmonising your study and sample data (metadata) texts by using controlled vocabularies and ontologies helps searches find all relevant data by preventing missed results due to misspellings or non-standard term usage
+The search is also aware of controlled dictionary/ontology and will expand results to include synonyms, with optional 
+extension to include child terms. 
+Click on the question mark next to the search bar to open `Help` with more details about advanced search functionality.
 
-The search is also controlled vocabulary/ontology aware and will expand results to include synonyms, with optional extension to include child terms. You can use asterisks (\*) to allow any positive number of wildcard characters: “*ale” will find “male” and “female” for example. Click on the question mark next to the search bar to open \*\*Help\** with more details about advanced search functionality.
+![SearchHelpGIF](doc-odm-user-guide/gif/search_help.gif)
 
-The facets beneath the search bar allow you to filter down the results of a search based on the samaple data (metadata) fields that
-are present in your results.
+The facets on the left side allow you to filter down the results of a search based on the metadata fields that 
+are presented in your results.
 
-To access more details about a study and to explore it further click the name of the study which will launch
-the Metadata Editor in a new tab.
+![FacetsGIF](doc-odm-user-guide/gif/facets.gif)
+
+You can find more about Search functionality on [Study Browser](../doc-odm-user-guide/studybrowser.md) page 
+of this guide.
 
 ## Metadata Editor
 
+To access more details about a study and to explore it further click the name of the study which will launch
+the **Metadata Editor** in a new tab.
+
 ![image](doc-odm-user-guide/images/quickstart_user_studymetainfoeditor.png)
 
-The Metadata Editor allows you to see all the information about a study, the samples contained in the study and any
-signal data types associated with the study, for example, expression or variant data.
+The Metadata Editor allows you to see all the information about a Study metadata, Samples, Libraries, and Preparations
+metadata contained in the Study and any Data Classes (signal data and attached files) associated with the Study, 
+for example, expression or variant data.
+
+You can find more about this functionality on [Metadata Editor](../doc-odm-user-guide/metadata-editor.md) page
+of this guide.

docs/user-guide/doc-odm-user-guide/doc-odm-user-guide/gif/search_help.gif

@@ -65,7 +65,7 @@ Want to know more? Learn more by watching our videos below.
 
 ## In Depth User Guide Articles
 
-* [User Quick Start Guide](doc-odm-user-guide/quickstart_user.md)
+* [Start](doc-odm-user-guide/quickstart_user.md)
     * [Dashboard](doc-odm-user-guide/quickstart_user.md#dashboard)
     * [Study Browser](doc-odm-user-guide/quickstart_user.md#study-browser)
     * [Metadata Editor](doc-odm-user-guide/quickstart_user.md#metadata-editor)

docs/user-guide/doc-odm-user-guide/doc-odm-user-guide/gif/start.gif

@@ -22,7 +22,7 @@ nav:
       - About Genestack: https://genestack.com/
     - Advanced Guide:
         - user-guide/index.md
-        - Quick Start Guide: user-guide/doc-odm-user-guide/quickstart_user.md
+        - Start: user-guide/doc-odm-user-guide/quickstart_user.md
         - User Setup: user-guide/doc-odm-user-guide/setup.md
         - Create New Study: user-guide/doc-odm-user-guide/create-study.md
         - Import Data on ODM: user-guide/doc-odm-user-guide/import-samples-spreadsheet.md