Merge pull request #59 from rlibouba/braker3_error_augustus_env

Braker3 error augustus env

Author: abretaud

tools/braker3/braker3.xml

@@ -10,6 +10,12 @@
         <expand macro="requirements"/>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+
+## Copy Augustus config dir to work dir, to make sure it's writable when running with containers
+cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ &&
+export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ &&
+
+
 braker.pl
 --genome '${genome}'
 $softmasking

tools/braker3/macros.xml

@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">3.0.8</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
 
     <xml name="requirements">
         <container type="docker">teambraker/braker3:v3.0.7.6</container>