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Merge pull request #56 from dadrasarmin/braker3-text-typo-correction
Braker3 text typo correction
2 parents 040d093 + 363dc2a commit d6f7fd5

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tools/braker/braker.xml

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@@ -82,7 +82,7 @@ $advanced.filterOutShort
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<section name="advanced" expanded="false" title="Advanced">
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<param argument="--UTR" type="boolean" checked="false" truevalue="--UTR=on" falsevalue="" label="" help="Experimental, requires RNASeq data (bam) and a softmasked genome" />
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<param argument="--filterOutShort" type="boolean" checked="false" truevalue="--filterOutShort" falsevalue="" label="Filter out too short traingin gene predicted by GeneMark-EX" />
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<param argument="--filterOutShort" type="boolean" checked="false" truevalue="--filterOutShort" falsevalue="" label="Filter out too short training gene predicted by GeneMark-EX" />
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<param argument="--eval" type="data" format="gtf" optional="true" label="Reference set to evaluate predictions" help="using evaluation scripts from GaTech" />
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<param argument="--eval_pseudo" type="data" format="gff3" optional="true" label="File with pseudogenes that will be excluded from accuracy evaluation" />
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</section>

tools/braker3/braker3.xml

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@@ -112,7 +112,7 @@ $advanced.alternatives_from_evidence
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<section name="advanced" expanded="false" title="Advanced">
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<!--param argument="-\-UTR" type="boolean" checked="false" truevalue="-\-UTR=on" falsevalue="" label="" help="Experimental, requires RNASeq data (bam) and a softmasked genome" /-->
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<param argument="--filterOutShort" type="boolean" checked="false" truevalue="--filterOutShort" falsevalue="" label="Filter out too short traingin gene predicted by GeneMark-EX" />
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<param argument="--filterOutShort" type="boolean" checked="false" truevalue="--filterOutShort" falsevalue="" label="Filter out too short training gene predicted by GeneMark-EX" />
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<param argument="--eval" type="data" format="gtf" optional="true" label="Reference set to evaluate predictions" help="using evaluation scripts from GaTech" />
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<param argument="--eval_pseudo" type="data" format="gff3" optional="true" label="File with pseudogenes that will be excluded from accuracy evaluation" />
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<param argument="--alternatives-from-evidence" type="boolean" checked="true" truevalue="--alternatives-from-evidence=true" falsevalue="--alternatives-from-evidence=false" label="Output alternative transcripts based on explicit evidence from hints"/>

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