Warning: species MGLY has emissions diagnostics but is not in benchmark_categories.yml

[yantosca]

Your name

Bob Yantosca

Your affiliation

Harvard + GCST

What happened? What did you expect to happen?

When generating the 1-year benchmark plots for GEOS-Chem 14.7.0-rc.0, I noticed this output:

Warning: species MGLY has emissions diagnostics but is not in benchmark_categories.yml

To fix this we should add MGLY to the file gcpy/benchmark/modules/benchmark_categories.yml under Primary_Organics:HCs:

  Primary_Organics:
    Alcohols:
      - EOH
      - MOH
    Biogenics:
      - ISOP
      - MTPA
      - MTPO
      - LIMO
    HCs:
      - ALK4
      - ALK6
      - BENZ
      - CH4
      - C2H2
      - C2H4
      - C2H6
      - C3H8
      - C4H6
      - EBZ
      - MGLY  # <== add this here
      - PRPE
      - STYR
      - TMB
      - TOLU
      - XYLE

What are the steps to reproduce the bug?

Generate emissions plots from a fullchem benchmark simulation

Please attach any relevant configuration and log files.

No response

What GCPy version were you using?

1.7.0 in prep

What environment were you running GCPy on?

Local cluster

What python environment were you using?

The environment generated with this YAML file: https://github.com/geoschem/gcpy/blob/dev/docs/environment_files/gcpy_environment_py313.yml

Will you be addressing this bug yourself?

Yes

Additional information

No response

[yantosca]

There may also be other inconsistencies in the emission species as well. We can look at the 14.7.0 benchmark logs to see which species can be added or removed.

[yantosca]

We can now close this issue as PR #413 has been merged.