Update dependencies and bump version to 4.3.0 (#25)

Author: TheByronHimes

.devcontainer/Dockerfile

@@ -1,7 +1,10 @@
-FROM mcr.microsoft.com/devcontainers/python:2.0.2-3.13-trixie
+FROM mcr.microsoft.com/devcontainers/python:3.0.5-3.13-trixie
 
 ENV PYTHONUNBUFFERED=1
 
+# Update and upgrade system packages for latest security fixes
+RUN apt-get update && apt-get upgrade -y
+
 # Update args in docker-compose.yaml to set the UID/GID of the "vscode" user.
 ARG USER_UID=1000
 ARG USER_GID=$USER_UID

.devcontainer/license_header.txt

@@ -1,4 +1,4 @@
-Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 for the German Human Genome-Phenome Archive (GHGA)
 
 Licensed under the Apache License, Version 2.0 (the "License");

.pre-commit-config.yaml

@@ -45,7 +45,7 @@ repos:
       - id: no-commit-to-branch
         args: [--branch, dev, --branch, int, --branch, main]
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.14.9
+    rev: v0.15.0
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]

.pyproject_generation/README.md

@@ -1,5 +1,5 @@
 <!--
- Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+ Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
  for the German Human Genome-Phenome Archive (GHGA)
 
  Licensed under the Apache License, Version 2.0 (the "License");

.pyproject_generation/pyproject_custom.toml

@@ -1,11 +1,11 @@
 [project]
 name = "sms"
-version = "4.2.2"
+version = "4.3.0"
 description = "State Management Service - Provides a REST API for basic infrastructure technology state management."
 dependencies = [
     "typer >= 0.19",
-    "ghga-service-commons[api] >= 5.1",
-    "hexkit[mongodb,s3,akafka] >= 7.1",
+    "ghga-service-commons[api] >= 7.0",
+    "hexkit[mongodb,s3,akafka] >= 8.0",
     "hvac>=2",
 ]
 

.pyproject_generation/pyproject_template.toml

@@ -1,5 +1,5 @@
 [build-system]
-requires = ["setuptools>=80.9"]
+requires = ["setuptools>=80.10"]
 build-backend = "setuptools.build_meta"
 
 [project]
@@ -101,7 +101,7 @@ check_untyped_defs = true
 no_site_packages = false
 
 [tool.pytest.ini_options]
-minversion = "8.4"
+minversion = "9.0"
 asyncio_mode = "strict"
 asyncio_default_fixture_loop_scope = "function"
 

.readme_generation/README.md

@@ -1,5 +1,5 @@
 <!--
- Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+ Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
  for the German Human Genome-Phenome Archive (GHGA)
 
  Licensed under the Apache License, Version 2.0 (the "License");

.template/README.md

@@ -1,5 +1,5 @@
 <!--
- Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+ Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
  for the German Human Genome-Phenome Archive (GHGA)
 
  Licensed under the Apache License, Version 2.0 (the "License");

Dockerfile

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

Dockerfile.debian

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");