Merge branch 'ds/sparse-index-protections'

Builds on top of the sparse-index infrastructure to mark operations
that are not ready to mark with the sparse index, causing them to
fall back on fully-populated index that they always have worked with.

* ds/sparse-index-protections: (47 commits)
  name-hash: use expand_to_path()
  sparse-index: expand_to_path()
  name-hash: don't add directories to name_hash
  revision: ensure full index
  resolve-undo: ensure full index
  read-cache: ensure full index
  pathspec: ensure full index
  merge-recursive: ensure full index
  entry: ensure full index
  dir: ensure full index
  update-index: ensure full index
  stash: ensure full index
  rm: ensure full index
  merge-index: ensure full index
  ls-files: ensure full index
  grep: ensure full index
  fsck: ensure full index
  difftool: ensure full index
  commit: ensure full index
  checkout: ensure full index
  ...

Author: gitster

Documentation/config/index.txt

@@ -14,6 +14,11 @@ index.recordOffsetTable::
 	Defaults to 'true' if index.threads has been explicitly enabled,
 	'false' otherwise.
 
+index.sparse::
+	When enabled, write the index using sparse-directory entries. This
+	has no effect unless `core.sparseCheckout` and
+	`core.sparseCheckoutCone` are both enabled. Defaults to 'false'.
+
 index.threads::
 	Specifies the number of threads to spawn when loading the index.
 	This is meant to reduce index load time on multiprocessor machines.

Documentation/git-sparse-checkout.txt

@@ -45,6 +45,20 @@ To avoid interfering with other worktrees, it first enables the
 When `--cone` is provided, the `core.sparseCheckoutCone` setting is
 also set, allowing for better performance with a limited set of
 patterns (see 'CONE PATTERN SET' below).
++
+Use the `--[no-]sparse-index` option to toggle the use of the sparse
+index format. This reduces the size of the index to be more closely
+aligned with your sparse-checkout definition. This can have significant
+performance advantages for commands such as `git status` or `git add`.
+This feature is still experimental. Some commands might be slower with
+a sparse index until they are properly integrated with the feature.
++
+**WARNING:** Using a sparse index requires modifying the index in a way
+that is not completely understood by external tools. If you have trouble
+with this compatibility, then run `git sparse-checkout init --no-sparse-index`
+to rewrite your index to not be sparse. Older versions of Git will not
+understand the sparse directory entries index extension and may fail to
+interact with your repository until it is disabled.
 
 'set'::
 	Write a set of patterns to the sparse-checkout file, as given as

Documentation/technical/index-format.txt

@@ -44,6 +44,13 @@ Git index format
   localization, no special casing of directory separator '/'). Entries
   with the same name are sorted by their stage field.
 
+  An index entry typically represents a file. However, if sparse-checkout
+  is enabled in cone mode (`core.sparseCheckoutCone` is enabled) and the
+  `extensions.sparseIndex` extension is enabled, then the index may
+  contain entries for directories outside of the sparse-checkout definition.
+  These entries have mode `040000`, include the `SKIP_WORKTREE` bit, and
+  the path ends in a directory separator.
+
   32-bit ctime seconds, the last time a file's metadata changed
     this is stat(2) data
 
@@ -385,3 +392,15 @@ The remaining data of each directory block is grouped by type:
 	in this block of entries.
 
     - 32-bit count of cache entries in this block
+
+== Sparse Directory Entries
+
+  When using sparse-checkout in cone mode, some entire directories within
+  the index can be summarized by pointing to a tree object instead of the
+  entire expanded list of paths within that tree. An index containing such
+  entries is a "sparse index". Index format versions 4 and less were not
+  implemented with such entries in mind. Thus, for these versions, an
+  index containing sparse directory entries will include this extension
+  with signature { 's', 'd', 'i', 'r' }. Like the split-index extension,
+  tools should avoid interacting with a sparse index unless they understand
+  this extension.

Documentation/technical/sparse-index.txt

@@ -0,0 +1,208 @@
+Git Sparse-Index Design Document
+================================
+
+The sparse-checkout feature allows users to focus a working directory on
+a subset of the files at HEAD. The cone mode patterns, enabled by
+`core.sparseCheckoutCone`, allow for very fast pattern matching to
+discover which files at HEAD belong in the sparse-checkout cone.
+
+Three important scale dimensions for a Git working directory are:
+
+* `HEAD`: How many files are present at `HEAD`?
+
+* Populated: How many files are within the sparse-checkout cone.
+
+* Modified: How many files has the user modified in the working directory?
+
+We will use big-O notation -- O(X) -- to denote how expensive certain
+operations are in terms of these dimensions.
+
+These dimensions are ordered by their magnitude: users (typically) modify
+fewer files than are populated, and we can only populate files at `HEAD`.
+
+Problems occur if there is an extreme imbalance in these dimensions. For
+example, if `HEAD` contains millions of paths but the populated set has
+only tens of thousands, then commands like `git status` and `git add` can
+be dominated by operations that require O(`HEAD`) operations instead of
+O(Populated). Primarily, the cost is in parsing and rewriting the index,
+which is filled primarily with files at `HEAD` that are marked with the
+`SKIP_WORKTREE` bit.
+
+The sparse-index intends to take these commands that read and modify the
+index from O(`HEAD`) to O(Populated). To do this, we need to modify the
+index format in a significant way: add "sparse directory" entries.
+
+With cone mode patterns, it is possible to detect when an entire
+directory will have its contents outside of the sparse-checkout definition.
+Instead of listing all of the files it contains as individual entries, a
+sparse-index contains an entry with the directory name, referencing the
+object ID of the tree at `HEAD` and marked with the `SKIP_WORKTREE` bit.
+If we need to discover the details for paths within that directory, we
+can parse trees to find that list.
+
+At time of writing, sparse-directory entries violate expectations about the
+index format and its in-memory data structure. There are many consumers in
+the codebase that expect to iterate through all of the index entries and
+see only files. In fact, these loops expect to see a reference to every
+staged file. One way to handle this is to parse trees to replace a
+sparse-directory entry with all of the files within that tree as the index
+is loaded. However, parsing trees is slower than parsing the index format,
+so that is a slower operation than if we left the index alone. The plan is
+to make all of these integrations "sparse aware" so this expansion through
+tree parsing is unnecessary and they use fewer resources than when using a
+full index.
+
+The implementation plan below follows four phases to slowly integrate with
+the sparse-index. The intention is to incrementally update Git commands to
+interact safely with the sparse-index without significant slowdowns. This
+may not always be possible, but the hope is that the primary commands that
+users need in their daily work are dramatically improved.
+
+Phase I: Format and initial speedups
+------------------------------------
+
+During this phase, Git learns to enable the sparse-index and safely parse
+one. Protections are put in place so that every consumer of the in-memory
+data structure can operate with its current assumption of every file at
+`HEAD`.
+
+At first, every index parse will call a helper method,
+`ensure_full_index()`, which scans the index for sparse-directory entries
+(pointing to trees) and replaces them with the full list of paths (with
+blob contents) by parsing tree objects. This will be slower in all cases.
+The only noticeable change in behavior will be that the serialized index
+file contains sparse-directory entries.
+
+To start, we use a new required index extension, `sdir`, to allow
+inserting sparse-directory entries into indexes with file format
+versions 2, 3, and 4. This prevents Git versions that do not understand
+the sparse-index from operating on one, while allowing tools that do not
+understand the sparse-index to operate on repositories as long as they do
+not interact with the index. A new format, index v5, will be introduced
+that includes sparse-directory entries by default. It might also
+introduce other features that have been considered for improving the
+index, as well.
+
+Next, consumers of the index will be guarded against operating on a
+sparse-index by inserting calls to `ensure_full_index()` or
+`expand_index_to_path()`. If a specific path is requested, then those will
+be protected from within the `index_file_exists()` and `index_name_pos()`
+API calls: they will call `ensure_full_index()` if necessary. The
+intention here is to preserve existing behavior when interacting with a
+sparse-checkout. We don't want a change to happen by accident, without
+tests. Many of these locations may not need any change before removing the
+guards, but we should not do so without tests to ensure the expected
+behavior happens.
+
+It may be desirable to _change_ the behavior of some commands in the
+presence of a sparse index or more generally in any sparse-checkout
+scenario. In such cases, these should be carefully communicated and
+tested. No such behavior changes are intended during this phase.
+
+During a scan of the codebase, not every iteration of the cache entries
+needs an `ensure_full_index()` check. The basic reasons include:
+
+1. The loop is scanning for entries with non-zero stage. These entries
+   are not collapsed into a sparse-directory entry.
+
+2. The loop is scanning for submodules. These entries are not collapsed
+   into a sparse-directory entry.
+
+3. The loop is part of the index API, especially around reading or
+   writing the format.
+
+4. The loop is checking for correct order of cache entries and that is
+   correct if and only if the sparse-directory entries are in the correct
+   location.
+
+5. The loop ignores entries with the `SKIP_WORKTREE` bit set, or is
+   otherwise already aware of sparse directory entries.
+
+6. The sparse-index is disabled at this point when using the split-index
+   feature, so no effort is made to protect the split-index API.
+
+Even after inserting these guards, we will keep expanding sparse-indexes
+for most Git commands using the `command_requires_full_index` repository
+setting. This setting will be on by default and disabled one builtin at a
+time until we have sufficient confidence that all of the index operations
+are properly guarded.
+
+To complete this phase, the commands `git status` and `git add` will be
+integrated with the sparse-index so that they operate with O(Populated)
+performance. They will be carefully tested for operations within and
+outside the sparse-checkout definition.
+
+Phase II: Careful integrations
+------------------------------
+
+This phase focuses on ensuring that all index extensions and APIs work
+well with a sparse-index. This requires significant increases to our test
+coverage, especially for operations that interact with the working
+directory outside of the sparse-checkout definition. Some of these
+behaviors may not be the desirable ones, such as some tests already
+marked for failure in `t1092-sparse-checkout-compatibility.sh`.
+
+The index extensions that may require special integrations are:
+
+* FS Monitor
+* Untracked cache
+
+While integrating with these features, we should look for patterns that
+might lead to better APIs for interacting with the index. Coalescing
+common usage patterns into an API call can reduce the number of places
+where sparse-directories need to be handled carefully.
+
+Phase III: Important command speedups
+-------------------------------------
+
+At this point, the patterns for testing and implementing sparse-directory
+logic should be relatively stable. This phase focuses on updating some of
+the most common builtins that use the index to operate as O(Populated).
+Here is a potential list of commands that could be valuable to integrate
+at this point:
+
+* `git commit`
+* `git checkout`
+* `git merge`
+* `git rebase`
+
+Hopefully, commands such as `git merge` and `git rebase` can benefit
+instead from merge algorithms that do not use the index as a data
+structure, such as the merge-ORT strategy. As these topics mature, we
+may enable the ORT strategy by default for repositories using the
+sparse-index feature.
+
+Along with `git status` and `git add`, these commands cover the majority
+of users' interactions with the working directory. In addition, we can
+integrate with these commands:
+
+* `git grep`
+* `git rm`
+
+These have been proposed as some whose behavior could change when in a
+repo with a sparse-checkout definition. It would be good to include this
+behavior automatically when using a sparse-index. Some clarity is needed
+to make the behavior switch clear to the user.
+
+This phase is the first where parallel work might be possible without too
+much conflicts between topics.
+
+Phase IV: The long tail
+-----------------------
+
+This last phase is less a "phase" and more "the new normal" after all of
+the previous work.
+
+To start, the `command_requires_full_index` option could be removed in
+favor of expanding only when hitting an API guard.
+
+There are many Git commands that could use special attention to operate as
+O(Populated), while some might be so rare that it is acceptable to leave
+them with additional overhead when a sparse-index is present.
+
+Here are some commands that might be useful to update:
+
+* `git sparse-checkout set`
+* `git am`
+* `git clean`
+* `git stash`

Makefile

@@ -995,6 +995,7 @@ LIB_OBJS += setup.o
 LIB_OBJS += shallow.o
 LIB_OBJS += sideband.o
 LIB_OBJS += sigchain.o
+LIB_OBJS += sparse-index.o
 LIB_OBJS += split-index.o
 LIB_OBJS += stable-qsort.o
 LIB_OBJS += strbuf.o

attr.c

@@ -733,7 +733,7 @@ static struct attr_stack *read_attr_from_file(const char *path, unsigned flags)
 	return res;
 }
 
-static struct attr_stack *read_attr_from_index(const struct index_state *istate,
+static struct attr_stack *read_attr_from_index(struct index_state *istate,
 					       const char *path,
 					       unsigned flags)
 {
@@ -763,7 +763,7 @@ static struct attr_stack *read_attr_from_index(const struct index_state *istate,
 	return res;
 }
 
-static struct attr_stack *read_attr(const struct index_state *istate,
+static struct attr_stack *read_attr(struct index_state *istate,
 				    const char *path, unsigned flags)
 {
 	struct attr_stack *res = NULL;
@@ -855,7 +855,7 @@ static void push_stack(struct attr_stack **attr_stack_p,
 	}
 }
 
-static void bootstrap_attr_stack(const struct index_state *istate,
+static void bootstrap_attr_stack(struct index_state *istate,
 				 struct attr_stack **stack)
 {
 	struct attr_stack *e;
@@ -894,7 +894,7 @@ static void bootstrap_attr_stack(const struct index_state *istate,
 	push_stack(stack, e, NULL, 0);
 }
 
-static void prepare_attr_stack(const struct index_state *istate,
+static void prepare_attr_stack(struct index_state *istate,
 			       const char *path, int dirlen,
 			       struct attr_stack **stack)
 {
@@ -1094,7 +1094,7 @@ static void determine_macros(struct all_attrs_item *all_attrs,
  * If check->check_nr is non-zero, only attributes in check[] are collected.
  * Otherwise all attributes are collected.
  */
-static void collect_some_attrs(const struct index_state *istate,
+static void collect_some_attrs(struct index_state *istate,
 			       const char *path,
 			       struct attr_check *check)
 {
@@ -1123,7 +1123,7 @@ static void collect_some_attrs(const struct index_state *istate,
 	fill(path, pathlen, basename_offset, check->stack, check->all_attrs, rem);
 }
 
-void git_check_attr(const struct index_state *istate,
+void git_check_attr(struct index_state *istate,
 		    const char *path,
 		    struct attr_check *check)
 {
@@ -1140,7 +1140,7 @@ void git_check_attr(const struct index_state *istate,
 	}
 }
 
-void git_all_attrs(const struct index_state *istate,
+void git_all_attrs(struct index_state *istate,
 		   const char *path, struct attr_check *check)
 {
 	int i;

attr.h

@@ -190,14 +190,14 @@ void attr_check_free(struct attr_check *check);
  */
 const char *git_attr_name(const struct git_attr *);
 
-void git_check_attr(const struct index_state *istate,
+void git_check_attr(struct index_state *istate,
 		    const char *path, struct attr_check *check);
 
 /*
  * Retrieve all attributes that apply to the specified path.
  * check holds the attributes and their values.
  */
-void git_all_attrs(const struct index_state *istate,
+void git_all_attrs(struct index_state *istate,
 		   const char *path, struct attr_check *check);
 
 enum git_attr_direction {

builtin/add.c

@@ -141,6 +141,8 @@ static int renormalize_tracked_files(const struct pathspec *pathspec, int flags)
 {
 	int i, retval = 0;
 
+	/* TODO: audit for interaction with sparse-index. */
+	ensure_full_index(&the_index);
 	for (i = 0; i < active_nr; i++) {
 		struct cache_entry *ce = active_cache[i];
 

builtin/checkout-index.c

@@ -120,6 +120,8 @@ static void checkout_all(const char *prefix, int prefix_length)
 	int i, errs = 0;
 	struct cache_entry *last_ce = NULL;
 
+	/* TODO: audit for interaction with sparse-index. */
+	ensure_full_index(&the_index);
 	for (i = 0; i < active_nr ; i++) {
 		struct cache_entry *ce = active_cache[i];
 		if (ce_stage(ce) != checkout_stage

builtin/checkout.c

@@ -369,6 +369,9 @@ static int checkout_worktree(const struct checkout_opts *opts,
 			       NULL);
 
 	enable_delayed_checkout(&state);
+
+	/* TODO: audit for interaction with sparse-index. */
+	ensure_full_index(&the_index);
 	for (pos = 0; pos < active_nr; pos++) {
 		struct cache_entry *ce = active_cache[pos];
 		if (ce->ce_flags & CE_MATCHED) {
@@ -513,6 +516,8 @@ static int checkout_paths(const struct checkout_opts *opts,
 	 * Make sure all pathspecs participated in locating the paths
 	 * to be checked out.
 	 */
+	/* TODO: audit for interaction with sparse-index. */
+	ensure_full_index(&the_index);
 	for (pos = 0; pos < active_nr; pos++)
 		if (opts->overlay_mode)
 			mark_ce_for_checkout_overlay(active_cache[pos],